| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,218,975 – 2,219,095 |
| Length | 120 |
| Max. P | 0.960770 |
| Location | 2,218,975 – 2,219,095 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -39.12 |
| Consensus MFE | -35.00 |
| Energy contribution | -35.32 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2218975 120 + 22407834 CUUAAAGGCCACUUUGGGCAUUAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUUGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUGAU .......(((.((((((.(((.....((((...(((((.(((((((.....)))).((....))......))).))))).))))))).)))))))))....................... ( -39.30) >DroSim_CAF1 3477 120 + 1 CUUAAAGGCCACUUUGGGCAUUAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUGAU .......(((.((((((.((((.....(((((...(....).((((.....)))).).))))(((((........)))))...)))).)))))))))....................... ( -39.50) >DroEre_CAF1 3462 120 + 1 CUUAAAGGCCACUUUGGGCAUCAAUUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUUAACAACUCCAACAAACUCAU ......(((((((..(((((((.....((......))((((.((((.....)))).((....)).))))......))))))).))))))).(((.....................))).. ( -39.70) >DroYak_CAF1 3461 120 + 1 CUUGAAGGCCACUUUGGGCAUCAAUUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAGCUCAU ((((..(((((((..(((((((.....((......))((((.((((.....)))).((....)).))))......))))))).))))))).(((...........)))...))))..... ( -42.00) >DroAna_CAF1 3416 120 + 1 UUUGAAAGCCACCUUGGGCAUCAACCUGGGGCACACAUCCGAGGCUCUGAUGGCCAGUUCCCGCAUUGAAUCUCAGGUUCUCCAGUGGCCGGAGGGCAUCAAUAACUCCAACAAGCUAAU ((((...(((((..((((....(((((((((..((.((.((.((..(((.....)))..)))).))))..))))))))).))))))))).((((...........))))..))))..... ( -35.10) >consensus CUUAAAGGCCACUUUGGGCAUCAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUCAU .......(((.((((((.(((.....((((...(((((.(((((((.....)))).((....))......))).))))).))))))).)))))))))....................... (-35.00 = -35.32 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006