Locus 7778

Sequence ID 2L_DroMel_CAF1
Location 21,925,939 – 21,926,059
Length 120
Max. P 0.939610
window12473

overview

Window 3

Location 21,925,939 – 21,926,059
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.61
Mean single sequence MFE -32.90
Consensus MFE -15.56
Energy contribution -16.51
Covariance contribution 0.95
Combinations/Pair 1.48
Mean z-score -2.15
Structure conservation index 0.47
SVM decision value 1.28
SVM RNA-class probability 0.939610
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21925939 120 - 22407834
CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAAUAAAAAUGUAUUACUCC
....(((((((...(((((..(((((((((((((..((((((((......)))))).))..)).)))))))))))..)))))....)))))))........................... ( -34.40)
>DroSec_CAF1 213469 120 - 1
CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGCCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC
....(((((((...(((((..(((((((((((....((((((((......)))))).)).....)))))))))))..)))))....))))))).......((((((.......)))))). ( -36.20)
>DroSim_CAF1 157805 120 - 1
CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC
....(((((((...(((((..(((((((((((((..((((((((......)))))).))..)).)))))))))))..)))))....))))))).......((((((.......)))))). ( -38.70)
>DroEre_CAF1 180532 120 - 1
UUAAUAGCGACAUGGUGUCGAUAUCGGGAUAUGUUUUCAUUUCAACCGGGUGAGGUCGGAGGCAAUGUUGCGAUGGCGGCUCAUCGAUUGCUAAACGUCAGAGAAAAAAUGUAUUACUCC
....(((((((((((.((((.(((((.(((((((((((((((((......)))))).)))))).))))).))))).)))))))).).))))))........................... ( -32.70)
>DroYak_CAF1 175988 102 - 1
UUAAUAGCGAUACGGUGUCGAUGUCGUUAUAUGUUU-----UCAACGGGGUGAAAUCGGAGGCGAUGUUGCGACGGCAGC-------------AUCGUCAGAGUAAAAAUGCAUUACUCC
...(((((((((((....)).)))))))))......-----.....(((((((.......(((((((((((....)))))-------------))))))...(((....))).))))))) ( -35.90)
>DroAna_CAF1 155788 91 - 1
------------------------CGUGCCGCAUUUCCAUUUCAACUGA-----AUUGAAGUUGAUGGCGCGAUGGCGACGUAUCGAUUGUCAAAUGUCAGUGUAAAAUUUUAUUACUUC
------------------------(((((((((((((...(((....))-----)..)))).)).))))))).((((((((...)).))))))........................... ( -19.50)
>consensus
CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUCAACCAGGUGAAAUCGGAGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC
......................(((((((((((((.((((((((......)))))).)).)))).)))))))))((((.................)))).((((((.......)))))). (-15.56 = -16.51 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:42 2006