Locus 7772

Sequence ID 2L_DroMel_CAF1
Location 21,921,799 – 21,921,897
Length 98
Max. P 0.919518
window12464

overview

Window 4

Location 21,921,799 – 21,921,897
Length 98
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 75.70
Mean single sequence MFE -31.53
Consensus MFE -20.09
Energy contribution -19.96
Covariance contribution -0.13
Combinations/Pair 1.23
Mean z-score -1.95
Structure conservation index 0.64
SVM decision value 1.13
SVM RNA-class probability 0.919518
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21921799 98 + 22407834
UUGCCCUGGGGUUAGAUUGUGGGUGCCGGCGCUUCUGUUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG-GAUGGCCGUGGAUGCGUAGCUUA
..((((..............))))((..((((.(((((((((((((((((((.....))))........))))))-))))))...))).)))).))... ( -32.84)
>DroSec_CAF1 209222 79 + 1
UUGCCCU----------UAUGGGUGCCGUCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG----------GGAUGCGCAGCUUA
..((((.----------...))))((((((.(((((((((((....)))))))..(.((((....)))).)))))----------.)))).))...... ( -31.60)
>DroSim_CAF1 153747 79 + 1
UUGCCCU----------UAUGGGUGCCGUCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG----------GGAUGCGCAGCUUA
..((((.----------...))))((((((.(((((((((((....)))))))..(.((((....)))).)))))----------.)))).))...... ( -31.60)
>DroYak_CAF1 170733 99 + 1
UUGCCCUGGGGUUACAUUGGGGGUGCCUGUGUUUCUGUUAUCCUGUGAUUGCAUUGUAGUAUUCCUGCCUUGAAGGGAUGGCCUCAGAUGCGCAGCUUC
..(((((.((......)).)))))((.(((((.(((((((((((.......((..((((.....))))..))..))))))))...))).)))))))... ( -30.10)
>consensus
UUGCCCU__________UAUGGGUGCCGGCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG__________GGAUGCGCAGCUUA
..((((..............))))((.(.(((.(((((((((....)))))).(((.((((....)))).)))............))).)))).))... (-20.09 = -19.96 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:34 2006