| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,919,600 – 21,919,712 |
| Length | 112 |
| Max. P | 0.754558 |
| Location | 21,919,600 – 21,919,712 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -47.48 |
| Consensus MFE | -42.31 |
| Energy contribution | -42.87 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21919600 112 - 22407834 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-A-------UCGCGAUUGCUGGGCGCCGUGCUCGAGCCGCACAG .............(((((..(..((.((((((...((((((((...((.(((((((((....))))))...))).)-)-------.))))).))).))))))))..).....)))))... ( -46.20) >DroSec_CAF1 207058 112 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-A-------UCGCGAUUGCCGGGCGCCGUGCUCGACCCGCACAG ...................((((((.(.(((..(..((..((((((..((((((((((....))))))..(((((.-.-------.))))).))))))))))))..)..)))))))))). ( -49.00) >DroSim_CAF1 151582 119 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-AUCGCGAAUCGCGAUUGCCGGGCGCCGUGCUCGACCCGCACAG .............(((((..(..((((...))))..)((((.((...(((((((((((....)))))).((((..(-((((((...)))))))..))))))))).)).)))))))))... ( -52.30) >DroEre_CAF1 173205 113 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGAAA-------UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG ...................((((((...(.((((.(((..((((((..((((((((((....))))))..(((((...-------.))))).))))))))))..))).))))))))))). ( -49.10) >DroYak_CAF1 168778 112 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGAGCGUCGCGCUCUUGGCGAAUGGCGGAUGUCAUCAUUCGCGA-A-------UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG ...................((((((...(.((((((((..((((((.(.((((.(.(((((((....))))))).)-.-------)))).).....))))))..))))))))))))))). ( -47.50) >DroAna_CAF1 149990 106 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-U-------UCGCGAUUACCAGGCGCCUCGCAC------CACAG ....................((((((((((((.(((.((((((....(.(((((((((....))))))...))).)-.-------.))))))))).))))).)))))))------..... ( -40.80) >consensus UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA_A_______UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG .............((((((((..((((...))))..))))((((((..((((((((((....))))))..((((((.........)))))).))))))))))...........))))... (-42.31 = -42.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:33 2006