Locus 7770

Sequence ID 2L_DroMel_CAF1
Location 21,918,737 – 21,918,857
Length 120
Max. P 0.872912
window12462

overview

Window 2

Location 21,918,737 – 21,918,857
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.06
Mean single sequence MFE -30.47
Consensus MFE -26.15
Energy contribution -26.65
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.86
SVM decision value 0.88
SVM RNA-class probability 0.872912
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21918737 120 + 22407834
GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA
........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60)
>DroSec_CAF1 206227 120 + 1
GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA
........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60)
>DroSim_CAF1 150513 120 + 1
GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA
........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60)
>DroEre_CAF1 172389 120 + 1
GAAAAUCAUCGGCCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAACCCGACAGAUACAUCCCAUUGUCAAUA
........((((..(((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........))...))))..((((........)))).... ( -24.00)
>DroYak_CAF1 167788 120 + 1
GAAAAUCAUCGUCCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACAUCAGCCCGACAGAUACAUCCCAUUGUCAAUA
..........(((.(((((((...((((.((...(((.((((...(((((....))))).)))))))...)).)))).((....))...)))))))))).((((........)))).... ( -31.50)
>DroAna_CAF1 149414 120 + 1
GAAAAUCAUCGGGCGGACUGAAAAGCAGCGCAAAAUGUGUUGAAAAUUGCACUGGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA
........((((((((.........((((((.....))))))..........(((((((((.........))))).)))).........)).))))))..((((........)))).... ( -32.50)
>consensus
GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA
.......(((...(((((((.........(((((.(((..(((..(((((....)))))....)))....))))))))((....))....)))))))...)))................. (-26.15 = -26.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:32 2006