Locus 7769

Sequence ID 2L_DroMel_CAF1
Location 21,911,560 – 21,911,677
Length 117
Max. P 0.925937
window12461

overview

Window 1

Location 21,911,560 – 21,911,677
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -32.35
Consensus MFE -26.83
Energy contribution -27.38
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.59
Structure conservation index 0.83
SVM decision value 1.17
SVM RNA-class probability 0.925937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21911560 117 - 22407834
AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC
........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60)
>DroSec_CAF1 199863 117 - 1
AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC
........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60)
>DroSim_CAF1 144143 117 - 1
AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC
........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60)
>DroEre_CAF1 164003 117 - 1
AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC
........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60)
>DroYak_CAF1 161061 116 - 1
AAAUCGCUUACAACGGUUCGUCUCCG-CAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC
....(((((.(..(((.......)))-..(((((((((((((..(((((.(((.(((((.....)))))...))).)))))))))))))...)))))...)---.))))).......... ( -23.90)
>DroAna_CAF1 142386 120 - 1
AAAUCGUUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAACUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCAAAGGAGGAGGCGUUCUUGCAAC
.......(((((..((..(((((((..(.(((((((((((((..(((((.(((.(((((.....)))))...))).)))))))))))))...)))))...)..)))))))..))))))). ( -31.80)
>consensus
AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG___AAGGCGUUCUUGCAUC
........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....))))))))))))........(.....).......))))))..)))))).. (-26.83 = -27.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:31 2006