Locus 7767

Sequence ID 2L_DroMel_CAF1
Location 21,909,669 – 21,909,759
Length 90
Max. P 0.619102
window12459

overview

Window 9

Location 21,909,669 – 21,909,759
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.47
Mean single sequence MFE -25.33
Consensus MFE -19.91
Energy contribution -19.72
Covariance contribution -0.19
Combinations/Pair 1.33
Mean z-score -1.48
Structure conservation index 0.79
SVM decision value 0.17
SVM RNA-class probability 0.619102
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21909669 90 - 22407834
AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGUCAUG
.(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -23.90)
>DroSec_CAF1 198225 90 - 1
AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGUCAUG
.(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -23.90)
>DroSim_CAF1 142267 90 - 1
AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGCCAUG
.(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -26.60)
>DroEre_CAF1 162161 90 - 1
AUGUCAGUCAAAAAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CUGCGGGGGACAAACUUGGUCGUG
.(((((((......))))))).....(((((((((....(((((.....)))--))...(((......----------------------------.))).(....)....))))))))) ( -21.40)
>DroYak_CAF1 158623 90 - 1
AUGUCAGUCAGAGAAUUGGCAACAUACAUGACCGAUGAAAUAUGUUAUACAU--AUAUAGCCAUCGAC----------------------------CGGCGGGGGACAAACUCGGUCGUG
.(((((((......))))))).....(((((((((....(((((.....)))--))...(((......----------------------------.))).(....)....))))))))) ( -27.00)
>DroAna_CAF1 140040 120 - 1
AUGUCAGUCAUAGAAUUGGCAACGGACAUAUUCGAUGAAAUAUGUUGGGCAUACAUAUAGAAAUCGAACGAAGCGGAGAUGCGACGGCGACGGCGACGGCGAGGGACAAUCUUGGUCAUG
(((((.((((......))))....))))).((((((...((((((.......))))))....))))))....((.(((((....(..((.((....)).))..)....))))).)).... ( -29.20)
>consensus
AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU__AUAUAGCGAUCGAA____________________________CGGCGGGGGACAAACUCGGUCAUG
.(((((((......))))))).....(((((((((.......(((((((......))))))).......................................(....)....))))))))) (-19.91 = -19.72 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:29 2006