Locus 7766

Sequence ID 2L_DroMel_CAF1
Location 21,907,517 – 21,907,621
Length 104
Max. P 0.641800
window12458

overview

Window 8

Location 21,907,517 – 21,907,621
Length 104
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 92.45
Mean single sequence MFE -21.27
Consensus MFE -19.29
Energy contribution -19.60
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.91
SVM decision value 0.22
SVM RNA-class probability 0.641800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21907517 104 - 22407834
UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CAUUGGCAACGCAACCGCCCACGCCCACGCCCACGCC
(((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...((....((....))....)). ( -23.00)
>DroSec_CAF1 196112 98 - 1
UGCACACGCCACUUCUUGCACAAAAUCUUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CUUUGGCAACGCAACCGCCCUCGC------CCACGCC
(((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...........------....... ( -22.10)
>DroSim_CAF1 140139 98 - 1
UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CUUUGGCAACGCAACCGCCCUCGC------CCACGCC
(((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...........------....... ( -22.10)
>DroEre_CAF1 160060 99 - 1
UGCACACACCGCUUCUUGCACAAAAUCCUUGCAACCCCGGUGGCAGCCUCUUAGACCUGCCACGCCCCCUAUGCCAACGCAACCGCCCACGC------CCACGCC
.((.......((...(((((.........))))).....(((((((..........)))))))))......(((....)))...))......------....... ( -17.90)
>consensus
UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC_CUUUGGCAACGCAACCGCCCACGC______CCACGCC
.((....((((....(((((.........))))).....(((((((..........)))))))........))))...((....))................)). (-19.29 = -19.60 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:28 2006