Locus 7759

Sequence ID 2L_DroMel_CAF1
Location 21,893,231 – 21,893,323
Length 92
Max. P 0.500000
window12444

overview

Window 4

Location 21,893,231 – 21,893,323
Length 92
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 83.75
Mean single sequence MFE -26.36
Consensus MFE -12.92
Energy contribution -13.80
Covariance contribution 0.88
Combinations/Pair 1.10
Mean z-score -2.41
Structure conservation index 0.49
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21893231 92 - 22407834
AAAGGUGUUCGGGCCGUUUGCCGUAAU--------------------GC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACA---UUUUCAAAAAAACAAAUAAAA
.((((((((..(......((((....(--------------------((--.((..(.......)..)).)))...))))......)..))))---))))................. ( -20.60)
>DroSec_CAF1 183069 114 - 1
AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACGUUUUCAA-AAAACAAAUAAAA
...(.((((..(...(((.((((....))))))).(((((.....))((--.((..(.......)..)).))....))).......)..)))).)((((....-.))))........ ( -24.30)
>DroSim_CAF1 126803 113 - 1
AAAGGUGUUCGGGUCGU-UGCCGUAAUUGGCGACAGCCGCUUAAUGCGC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACGUUUUCAA-AAAACAAAUAAAA
...(.((((..(...((-(((((....))))))).(((((.....))((--.((..(.......)..)).))....))).......)..)))).)((((....-.))))........ ( -28.10)
>DroEre_CAF1 147020 116 - 1
AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGGCGCUUAAUGCGCCGCGGGAUGUAAAAAACACCAACAAAAGGCAUAAAAACUAAACAACAUUUUCAA-AAAACAAAUAAAA
...((((((((..((((((((((....))))))..(((((.....)))))))))..)).....))))))..................................-............. ( -27.70)
>DroYak_CAF1 140685 113 - 1
UAAUGGGUUCAGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGCCCCGGGAUGUAAAAAAGACUGGGAAAAGGCAUAAAAACUGAA---CAUGGUCAA-AAAACAAAUAAAA
......((((((...(((.((((....))))))).(((((.....))..(((((..(.......)..)))))....))).......)))))---)........-............. ( -31.10)
>consensus
AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGC__CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACAUUUUCAA_AAAACAAAUAAAA
.....((((.((......(((((((...((((.....))))...))).....((..(.......)..)).......))))......)).))))........................ (-12.92 = -13.80 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:15 2006