Locus 7745

Sequence ID 2L_DroMel_CAF1
Location 21,864,135 – 21,864,233
Length 98
Max. P 0.983797
window12427

overview

Window 7

Location 21,864,135 – 21,864,233
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -21.26
Consensus MFE -20.00
Energy contribution -20.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.94
SVM decision value 1.95
SVM RNA-class probability 0.983797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21864135 98 - 22407834
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGCCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG
..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. ( -20.10)
>DroSec_CAF1 151902 98 - 1
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACGCAGGCAACAAAAACAGCAGUCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG
..((((.((((((....))))))((((((((......((((((.((..........)).))))))....))))...))))............)))).. ( -22.50)
>DroSim_CAF1 98240 98 - 1
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGUCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG
..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. ( -21.10)
>DroEre_CAF1 113732 98 - 1
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAACCAGCAGCCGUCUGCAAACUCAGCAAAAUCAACAAAACUGAACGGCAG
..((((((((((.........(((.............)))(....)..)))).((((....)))).......))....(((.......))).)))).. ( -20.92)
>DroYak_CAF1 106593 96 - 1
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGUAACAAAA--AGCAGCCGUCUGCAAACUCAGCAAAAUCAACAAAACUGAACGGCAG
..((((((((((..((((...((...((((........))))...)))))--)..)))))))(((.......)))..................))).. ( -21.70)
>consensus
UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGCCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG
..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. (-20.00 = -20.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:59 2006