Locus 7741

Sequence ID 2L_DroMel_CAF1
Location 21,863,041 – 21,863,154
Length 113
Max. P 0.645928
window12423

overview

Window 3

Location 21,863,041 – 21,863,154
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.86
Mean single sequence MFE -29.28
Consensus MFE -22.20
Energy contribution -21.76
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.76
SVM decision value 0.23
SVM RNA-class probability 0.645928
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21863041 113 + 22407834
CCACAAA-AUAACCGAAA-AA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGCCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC
.......-........((-((-----(((......(((.(((((((.(((......))).((((.((((..((......))..))))....))))....)))))))..)))))))))).. ( -28.40)
>DroSec_CAF1 150717 113 + 1
CCACAAA-AUAACCAAAA-AA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGUCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC
.......-........((-((-----(((......(((.(((((((....(((((.(((..((.(.(((((......))))).).))...))).))))))))))))..)))))))))).. ( -25.90)
>DroSim_CAF1 97129 114 + 1
CCACAAA-AUAACCAAAAAAA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGUCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC
.......-.........((((-----(((......(((.(((((((....(((((.(((..((.(.(((((......))))).).))...))).))))))))))))..)))))))))).. ( -25.90)
>DroEre_CAF1 112624 119 + 1
CCACAAAUAAAAAUCAAA-AAAGAAAAGAAAAUGUGCUAGGGAAAACCACUAAAUCGUGUUGGUAAGGUUCGUCCAAGAGCCGGCCCUGUUGCCAUUUAUUUUCCCGCAGCCUUUUUUGC
..............((((-((((............(((.(((((((((((........).))))..(((((......)))))(((......)))......))))))..))))))))))). ( -29.00)
>DroYak_CAF1 105512 113 + 1
UCGCAAA-AAAAGCCAAA-AA-----CGGAAAUAUGCUAGGGAAAACCACUAAAUAGUGUUGGUUAGGGUCGUCCAAGAGCCGGCCCUAAAGCCAUUUAUUUUCCCGUAGCCCUUUUUGC
..(((((-((...((...-..-----.))......(((((((((((.((((....)))).((((((((((((.(.....).))))))))..))))....))))))).))))..))))))) ( -37.20)
>consensus
CCACAAA_AUAACCAAAA_AA_____AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGCCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC
............................((((...(((.(((((((((((........).))))..(((((......)))))(((......)))......))))))..)))...)))).. (-22.20 = -21.76 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:55 2006