Locus 7738

Sequence ID 2L_DroMel_CAF1
Location 21,859,705 – 21,859,824
Length 119
Max. P 0.996621
window12419

overview

Window 9

Location 21,859,705 – 21,859,824
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.03
Mean single sequence MFE -42.77
Consensus MFE -39.48
Energy contribution -39.48
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -2.04
Structure conservation index 0.92
SVM decision value 2.72
SVM RNA-class probability 0.996621
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21859705 119 - 22407834
UC-GGCCUGCUCGUCAAUAAAUCGUAGAGUGCCAGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGGCGAGCAGAAAUAUAUGGG
..-...(((((((((.....(((((((((((..(((....((((((((((....)))))...))))).))).))))))))))).(((........)))..)))))))))........... ( -46.00)
>DroSec_CAF1 147703 119 - 1
UC-GGCCUGCUCGUCAAUAAAUCGUAGAGUGCCAGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGGCGAGCGGAAAUAUAUGGG
..-...(((((((((.....(((((((((((..(((....((((((((((....)))))...))))).))).))))))))))).(((........)))..)))))))))........... ( -45.30)
>DroSim_CAF1 94049 119 - 1
UC-GGCCUGCUCGUCAAUAAAUCGUAGAGUGCCAGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGGCGAGCGGAAAUAUAUGGG
..-...(((((((((.....(((((((((((..(((....((((((((((....)))))...))))).))).))))))))))).(((........)))..)))))))))........... ( -45.30)
>DroEre_CAF1 109864 119 - 1
UC-GGUCUGCUCGUCAAUAAAUCGUAGAGUGCCUGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGGCGAAGGAAAAUAUAUGGG
.(-((.(((((.........(((((((((((...((....((((((((((....)))))...))))).))..)))))))))))))))))))...((((....(....)...))))..... ( -38.00)
>DroYak_CAF1 101325 119 - 1
UC-GGUCUGCUCGUCAAUAAAUCGUAGAGUGCCUGUAAUGAUGCCAGCUUGGCAGAGCUUUGGGCAUAGCUUCACUCUGCGAUAGCAGCCGUUAAUGUCAGACGAGGGAAAAUAUAUGGG
..-..(((.((((((.....(((((((((((...((....((((((((((....)))))...))))).))..))))))))))).(((........)))..)))))))))........... ( -39.90)
>DroAna_CAF1 97801 120 - 1
UCUGGCCUGCUCGUCAAUAAAUCGUGGAGUGCCAGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGACGAGCGAAAAUAUAUGGG
.......((((((((........(((((((..((....))((((((((((....)))))...))))).))))))).((((....))))............))))))))............ ( -42.10)
>consensus
UC_GGCCUGCUCGUCAAUAAAUCGUAGAGUGCCAGUAAUGAUGCCAGCUUGGCAGAGCUCUGGGCAUAGCUCCACUCUGCGAUAGCAGCCGUUAAUGUCAGGCGAGCGAAAAUAUAUGGG
.......((((((((.....(((((((((((...((....((((((((((....)))))...))))).))..))))))))))).(((........)))..))))))))............ (-39.48 = -39.48 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:51 2006