Locus 7729

Sequence ID 2L_DroMel_CAF1
Location 21,847,209 – 21,847,300
Length 91
Max. P 0.748713
window12407

overview

Window 7

Location 21,847,209 – 21,847,300
Length 91
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -32.98
Consensus MFE -15.48
Energy contribution -16.32
Covariance contribution 0.84
Combinations/Pair 1.18
Mean z-score -2.18
Structure conservation index 0.47
SVM decision value 0.47
SVM RNA-class probability 0.748713
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21847209 91 + 22407834
GCAGCAGGAGCAGAUGCUGCAGCGGCGGUGAGUAUCAGAAAGCACCACAGUGCCAUAGAAAAGUGGCACACUCAUCGG------------------CAACUGCAAUGGC
((((((........)))))).((((((((((((....(....)......(((((((......))))))))))))))).------------------...))))...... ( -34.60)
>DroSec_CAF1 135094 91 + 1
GCAGCAGGAGCAGACGCUGCAGUGGCGGUGAGUAUCAGAAAGCACCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG------------------CAACUGCAAUGGC
...((....((((..((((..(((((((((..(......)..))))...(((.(((......))).))).))))))))------------------)..))))....)) ( -29.90)
>DroSim_CAF1 81572 91 + 1
GCAGCAGGAGCAGACGCUGCAGCGGCGGUGAGUAUCAGAAAGCUCCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG------------------CAACUGCAAUGGC
...((((..((.((((((((....)))))((((........))))....(((.(((......))).))).)))....)------------------)..))))...... ( -27.80)
>DroYak_CAF1 85958 91 + 1
GCAGCAGGAGCAGGCGCUGCAACAGCGGUGGGUAUCAGAAAGAGCCACCGUGCCAUAGAAAAGUGGAACAGUCAUCGC------------------CAAUUGCAAUGGC
(((((....)).((((.(((....(((((((...((.....)).))))))).((((......))))....).)).)))------------------)...)))...... ( -28.70)
>DroAna_CAF1 85327 109 + 1
GGAGCAGGAGCAGCUGCUGCAAUGUCGGUGAGUGUCAAAAAAUGCCACAGAGGCAUAGAAAACUGGCACAGCCAGCGACAGCGACUCGCCGAGUUGCAACUGAAACUGC
...((((...(((....((((((.((((((((((((.....(((((.....)))))......(((((...))))).)))....))))))))))))))).)))...)))) ( -43.90)
>consensus
GCAGCAGGAGCAGACGCUGCAGCGGCGGUGAGUAUCAGAAAGCACCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG__________________CAACUGCAAUGGC
...((((..((((...)))).....((((((((........))......(((.(((......))).)))..))))))......................))))...... (-15.48 = -16.32 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:40 2006