| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,199,132 – 2,199,222 |
| Length | 90 |
| Max. P | 0.560088 |
| Location | 2,199,132 – 2,199,222 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 78.43 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -14.58 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2199132 90 - 22407834 UUUCCGAU-----UUCU----GCGCUUUCGUUUUUGCCUUGUUGGG--GCAAAAAAUCGAAAAAGAUGGCUACUAGCAGGGCGGGCUAACAGAAAUCAUAG .....(((-----((((----(.(((........((((((((((((--((.....(((......))).))).))))))))))))))...)))))))).... ( -31.10) >DroPse_CAF1 42949 93 - 1 GAACCGAUGUGAGUUUU----AC-UUUUCUUUUUUGUCUUAUUGG---GCAAAAAAUCGAAAAAGAUGGCUACUAGCAAAGCGGGCUAACAGAAAGCAUAG ...(((.(((.(((..(----..-(((((((((((((((....))---))))))))..)))))..)..)))....)))...)))(((.......))).... ( -21.10) >DroEre_CAF1 8951 89 - 1 UUCCCGAU-----UUCU----GCGCUUUCGUUUUCGCCUUGUUG-G--GCAAAAAAUCGAAAAAGAUGGCUACUAGCAGGGCGGGCUAACAGAAACCAUAG .....(.(-----((((----(.(((........((((((((((-(--((.....(((......))).))..))))))))))))))...)))))).).... ( -25.40) >DroYak_CAF1 10743 90 - 1 UUCCCGAU-----UUCU----GCGCUUUCGCUUUCGCCUUGUUGGG--GCAAAAAAUCGAAAAAGAUGGCUACUAGCAGGGCGGGCUAACAGAAACCAUAG .....(.(-----((((----(.((....)).((((((((((((((--((.....(((......))).))).)))))))))))))....)))))).).... ( -29.60) >DroMoj_CAF1 23035 78 - 1 ---------------------GCGAAUUCCAUUUCGCUGUGAUUGA--GCAAAAAAUCGAAAAAGAUGGCUACUAACAGCGCGGGCUAACAGAAAACAUAG ---------------------(((((......)))(((((.....(--((.....(((......))).)))....)))))))................... ( -16.50) >DroAna_CAF1 8591 96 - 1 UUGGUAAU-----AUCUACUGGUACUUUCGCUUUCGUCAUGCUGGGGAGCAAAAAAUCGAAAAAGAUGGCUACUAACAGGGCGGGCUAACAGAAAUCAUAG (((((...-----.(((..(((((((.((..(((((...((((....))))......)))))..)).)).)))))..)))....)))))............ ( -18.30) >consensus UUCCCGAU_____UUCU____GCGCUUUCGUUUUCGCCUUGUUGGG__GCAAAAAAUCGAAAAAGAUGGCUACUAGCAGGGCGGGCUAACAGAAACCAUAG ................................(((((((((((((...((.....(((......))).))..)))))))))))))................ (-14.58 = -15.55 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:11 2006