Locus 7713

Sequence ID 2L_DroMel_CAF1
Location 21,820,189 – 21,820,292
Length 103
Max. P 0.682013
window12386

overview

Window 6

Location 21,820,189 – 21,820,292
Length 103
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -19.25
Consensus MFE -11.96
Energy contribution -11.77
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.62
SVM decision value 0.31
SVM RNA-class probability 0.682013
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21820189 103 - 22407834
UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CCCGAAUAGAAAAAAUAAAACUCUUGCGC
.....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------..((...(((...........)))..)). ( -16.50)
>DroGri_CAF1 66795 89 - 1
AACAAUGGCAACAAUGUGAAACAUAUGUCAACAUUUC-AUUUGUUAUUCAAAUCUAAACCAGGCCCAUAAACCA--------------------AAACACAACUUUGGG-C
.(((.((....)).)))..((((.(((.........)-)).)))).................(((((.......--------------------...........))))-) ( -13.07)
>DroSec_CAF1 60971 103 - 1
UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CGCGGAUAGAAAAAAUAAAACUCUCGCGC
.....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------((((((...............)).)))). ( -20.56)
>DroSim_CAF1 54598 103 - 1
UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CGCGGAUAGAAAAAAUAAAACUCUCGCGC
.....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------((((((...............)).)))). ( -20.56)
>DroEre_CAF1 68109 101 - 1
UACAAUGCCAUCAAUGGCAAUCAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUUUG--AGCGCCAUAAGGCGAACGCGAACGCGAAUAGCAAAAACAAAAC--------
.....(((((....)))))....................((((((((((........(--..((((....))))..)((....))))))))))))........-------- ( -25.30)
>DroYak_CAF1 58016 103 - 1
UACAAUGCCAUCAAUGGCCAAAAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUUUG--AGCGCCAUAAGGCAAA------CGCGAAUAGAAAAAAUAAAACUAUUUCGC
.....((((....(((((...((((.(((........))).)))).(((((....)))--)).)))))..))))..------.((((((((...........))).))))) ( -19.50)
>consensus
UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG__AGCGCCAUAAGGCAAA______CGCGAAUAGAAAAAAUAAAACUCUCGCGC
.....((((....(((((......(((....)))...((((((.....)))))).........)))))..))))..................................... (-11.96 = -11.77 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:21 2006