| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,807,960 – 21,808,058 |
| Length | 98 |
| Max. P | 0.546123 |
| Location | 21,807,960 – 21,808,058 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.17 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -17.11 |
| Energy contribution | -19.05 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.546123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21807960 98 + 22407834 CGAUUUGAGGUAGGAAAAUCCCAUUACGAGCUGAUGUAUCACAUGAGCGUUGAAUUUCAGAAACUAU----UAGAUUCCGAAAUAGAAAAUCACUCUCUUCG (((...(((...((......)).....(((((.(((.....))).))).....(((((.(((.(...----..).))).)))))......)).)))...))) ( -17.90) >DroSec_CAF1 50562 98 + 1 CGAUUUGAGGUAGGGAAAUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU----UAGAUUCUGAAAUAGAAAACUGCUCUCUUCG ......((((..(((....))).....(((((((....)))..(((...(((.(((((((((.(...----..).))))))))).))).))))))).)))). ( -26.10) >DroSim_CAF1 43891 98 + 1 CGAUUUGAGGUAGGGAAUUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU----UAGAUUCUGAAAUAGAAAACUGCUCUCUUCG ......((((..(((....))).....(((((((....)))..(((...(((.(((((((((.(...----..).))))))))).))).))))))).)))). ( -26.10) >DroEre_CAF1 55101 99 + 1 UGACGUGGGGGAGGGGAACCUCAUUACGAGCUGAUGUAUCACAAGUGCGUUGAAAUUCGGAAAGUAUCAGAUAGAUUCUGAAAUGGGAAACUACUCUCU--- ...(((((..((((....)))).)))))....(((((((.....))))))).......(((.(((.(((((.....)))))...((....))))).)))--- ( -26.70) >consensus CGAUUUGAGGUAGGGAAAUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU____UAGAUUCUGAAAUAGAAAACUACUCUCUUCG ......((((..(((....))).....((((.(((((((.....)))))))..(((((((((.(((.....))).)))))))))........)))).)))). (-17.11 = -19.05 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:17 2006