Locus 771

Sequence ID 2L_DroMel_CAF1
Location 2,196,967 – 2,197,059
Length 92
Max. P 0.591624
window1262

overview

Window 2

Location 2,196,967 – 2,197,059
Length 92
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.62
Mean single sequence MFE -20.25
Consensus MFE -14.14
Energy contribution -14.00
Covariance contribution -0.14
Combinations/Pair 1.11
Mean z-score -0.94
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.591624
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2196967 92 + 22407834
---UGUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUAGAGCAGCAA-GUGCAGCAGGUCGAUCU---------AUGCGCC----GU-AA
---..(((((((.....(((((..((((((....(((........)))...)))))).)))))....-.)))))))((.((....---------...))))----..-.. ( -22.40)
>DroVir_CAF1 21168 84 + 1
GGGGAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAAUGAACAGCAGGCUGCUG--------------------------
(.((.((((((......(((....((((((....(((........)))...))))))...))).......))))))..)).)..-------------------------- ( -16.82)
>DroPse_CAF1 40244 103 + 1
---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAACGGACAGCAGGCUGCUUCCACUCUUGAACGCGGC----AUUGC
---..((((((......(((....((((((....(((........)))...))))))...))).......)))))).((((((((.......))).)))))----..... ( -23.92)
>DroGri_CAF1 9675 82 + 1
--GCAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAAUGGGCAGCAGGUUGCUG--------------------------
--(((((((((......(((....((((((....(((........)))...))))))...))).......))))))...)))..-------------------------- ( -17.62)
>DroAna_CAF1 6371 92 + 1
---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUAGAGCAGAAA-GAUUAGCAAGUAAAC-------------GGGCAACAUGU-GG
---.(((((((......((((((.((((((....(((........)))...))))))...((.....-.....))...)))))-------------).)))))))..-.. ( -16.80)
>DroPer_CAF1 41602 103 + 1
---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAACGGACAGCAGGCUGCUUCCACUCUUGAACGCGGC----AUUGC
---..((((((......(((....((((((....(((........)))...))))))...))).......)))))).((((((((.......))).)))))----..... ( -23.92)
>consensus
___AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAA_GGACAGCAGGCUGCUG____________GCG_C_____U_G_
.....((((((......(((....((((((....(((........)))...))))))...))).......)))))).................................. (-14.14 = -14.00 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006