Locus 7702

Sequence ID 2L_DroMel_CAF1
Location 21,777,998 – 21,778,094
Length 96
Max. P 0.751619
window12372

overview

Window 2

Location 21,777,998 – 21,778,094
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -29.42
Consensus MFE -18.08
Energy contribution -17.83
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value 0.48
SVM RNA-class probability 0.751619
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21777998 96 + 22407834
GGCCAGGACACUUUCUGGCAUAAAUCAUUUGCAUUCAAAAUGAGA--CCAAUG-------AGGAAAGCCUGCGAAUGAGCGUCGAAGAUGAAUGCCGCA----------GAA-ACA----
.(((((((....)))))))...........(((((((...(..((--(.....-------(((....)))((......)))))..)..)))))))....----------...-...---- ( -24.90)
>DroPse_CAF1 31531 120 + 1
UGGCAGGACACUUUCUGGCAUAAAUCAUUUGCAUACGAAAUGAGAGGCCGAUGCGAGAGCAGAGAGGCCUGCGAGUGAGCGUCGAAGAUGAAUGCGAGAACAACACCCAGAAGGCAGUGG
........((((((((((......((((((((...(.......)(((((..(((....)))....)))))))))))))(((((......).))))...........))))))...)))). ( -36.80)
>DroEre_CAF1 22701 96 + 1
GGCCAGGACACUUUCUGGCAUAAAUCAUUUGCAUUCAAAAUGAGA--CCAAUG-------AGGAAAGCCUGCAAAUGAGCGUCGAAGAUGAAUGCCGCA----------GAA-GCC----
.(((((((....))))))).....((((((((.(((.....))).--......-------(((....)))))))))))(((.((........)).))).----------...-...---- ( -25.00)
>DroYak_CAF1 9693 93 + 1
GGCCAGGACACUUUCUGGCAUAAAUCAUUUGCAUUCAAAAUGAGA--CCAAUG-------AGGAAAGCCUGCGAAUGAGCGUCGAAGAUGAAUGCCGGA----------GAG--------
..........(((((((((((...((((((((.(((.....))).--......-------(((....))))))))))).((((...)))).))))))))----------)))-------- ( -28.80)
>DroAna_CAF1 17649 102 + 1
GGCCAGGACACUUUCUGGCAUAAAUCAUUUGCAUACAAAAUGAGA--CCAAUG-------AGAGGUGCCUGCGAAUGAGCGUCGAAGAUGAAUGCGACAACAAUA----AAA-ACA----
.(((((((....))))))).....(((((((((..(.....)..(--((....-------...)))...)))))))))..((((..........)))).......----...-...---- ( -24.20)
>DroPer_CAF1 33260 120 + 1
UGGCAGGACACUUUCUGGCAUAAAUCAUUUGCAUACGAAAUGAGAGGCCGAUGCGAGAGCAGAGAGGCCUGCGAGUGAGCGUCGAAGAUGAAUGCGAGAACAACACCCAGAAGGCAGUGG
........((((((((((......((((((((...(.......)(((((..(((....)))....)))))))))))))(((((......).))))...........))))))...)))). ( -36.80)
>consensus
GGCCAGGACACUUUCUGGCAUAAAUCAUUUGCAUACAAAAUGAGA__CCAAUG_______AGAAAAGCCUGCGAAUGAGCGUCGAAGAUGAAUGCCACA__________GAA_GCA____
.(((((((....))))))).....((((((((........((......))..........((......))))))))))(((((......).))))......................... (-18.08 = -17.83 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:08 2006