Locus 7701

Sequence ID 2L_DroMel_CAF1
Location 21,774,995 – 21,775,096
Length 101
Max. P 0.934558
window12370 window12371

overview

Window 0

Location 21,774,995 – 21,775,096
Length 101
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.38
Mean single sequence MFE -38.92
Consensus MFE -29.21
Energy contribution -30.23
Covariance contribution 1.02
Combinations/Pair 1.24
Mean z-score -2.77
Structure conservation index 0.75
SVM decision value 1.24
SVM RNA-class probability 0.934558
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21774995 101 + 22407834
---G-GUGGUAGGUGGUGGUCGGCAGGGUAUUCCUUUCCUGCUUCGGGUUUCCGAUGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGA
---.-.((((((((((..((((((((((........)))))))((((....)))).))))))))))).))((((.((((((....))))))...))))....... ( -38.70)
>DroSec_CAF1 16742 101 + 1
---G-GUGGUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUACUCAGCUUAGUUGUAAAUUUAGAACAACAAGCAAUUGGA
---.-.((((((((((..(((.(((((..(....)..)))))(((((....)))))))))))))))).))((((.(((((.........)))))))))....... ( -40.10)
>DroSim_CAF1 9519 101 + 1
---G-GUGGUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUACUCAGCUUAGUUGUAAAUUUAGAACAACAAGCAAUUGGA
---.-.((((((((((..(((.(((((..(....)..)))))(((((....)))))))))))))))).))((((.(((((.........)))))))))....... ( -40.10)
>DroEre_CAF1 19636 101 + 1
---G-GUGGUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGAUUUCCGACGGCCCGACUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGA
---.-............((((((((((..(....)..))))).((((....)))))))))((((((((.......((((((....))))))....)))))))).. ( -37.60)
>DroYak_CAF1 6883 104 + 1
UAGG-GUGGUAGGUGAUGGUCGGCAGGGGAUUCCUUUUCUGCUUCGGUUUUCCGACGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUAGA
((((-.(((((((((..(((((((((..((....))..)))).((((....)))))))))))))))).)).))))((((((....)))))).............. ( -41.60)
>DroAna_CAF1 15607 95 + 1
UGGAGGGGGGGAGUGGGAGUGGGCUUGGG----------GGCGAAGGAUUCCCAUAGCCUUGACUGCUCAGUUCAGUUGUGAAUUUACAACAACCAGAAGCCGGA
.((....(((((.((((((((((((((((----------(((....).)))))).)))))..))).)))).))).((((((....))))))..)).....))... ( -35.40)
>consensus
___G_GUGGUAGGUGGUGGUCGGCAGGGGAUUCCUUUCCUGCUUCGGGUUUCCGAAGGCCCGCCUGCUCAGCUUAGUUGUAAAUUUACAACAACAAGCAGUUGGA
.......((((((((..(((((((((((((....)))))))))((((....)))).))))))))))))..((((.(((((.........)))))))))....... (-29.21 = -30.23 +   1.02)

alignment

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secondary structure

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dotplot

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Window 1

Location 21,774,995 – 21,775,096
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.38
Mean single sequence MFE -28.17
Consensus MFE -17.76
Energy contribution -18.52
Covariance contribution 0.75
Combinations/Pair 1.19
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value 0.37
SVM RNA-class probability 0.708198
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21774995 101 - 22407834
UCCAACUGCUUGUUGUUGUAAAUUUACAACUAAGCUGAGCAGGCGGGCCAUCGGAAACCCGAAGCAGGAAAGGAAUACCCUGCCGACCACCACCUACCAC-C---
(((..(((((((((((((((....))))))..))).))))))..)))...((((....)))).(((((..........))))).................-.--- ( -28.00)
>DroSec_CAF1 16742 101 - 1
UCCAAUUGCUUGUUGUUCUAAAUUUACAACUAAGCUGAGUAGGCGGGCCUUCGGAAACCCGAAGCAGGAAAGGAAUCCCCUGCCGACCACCACCUACCAC-C---
.......(((((((((.........))))).))))((.(((((.((((.(((((....))))))).((..(((.....))).)).....)).))))))).-.--- ( -31.50)
>DroSim_CAF1 9519 101 - 1
UCCAAUUGCUUGUUGUUCUAAAUUUACAACUAAGCUGAGUAGGCGGGCCUUCGGAAACCCGAAGCAGGAAAGGAAUCCCCUGCCGACCACCACCUACCAC-C---
.......(((((((((.........))))).))))((.(((((.((((.(((((....))))))).((..(((.....))).)).....)).))))))).-.--- ( -31.50)
>DroEre_CAF1 19636 101 - 1
UCCAACUGCUUGUUGUUGUAAAUUUACAACUAAGCUGAGCAGUCGGGCCGUCGGAAAUCCGAAGCAGGAAAGGAAUCCCCUGCCGACCACCACCUACCAC-C---
(((.((((((((((((((((....))))))..))).))))))).)))..(((((...(((......))).(((.....))).))))).............-.--- ( -30.70)
>DroYak_CAF1 6883 104 - 1
UCUAACUGCUUGUUGUUGUAAAUUUACAACUAAGCUGAGCAGGCGGGCCGUCGGAAAACCGAAGCAGAAAAGGAAUCCCCUGCCGACCAUCACCUACCAC-CCUA
.....(((((((((((((((....))))))..))).))))))..(((...((((....)))).((((....((....))))))................)-)).. ( -26.30)
>DroAna_CAF1 15607 95 - 1
UCCGGCUUCUGGUUGUUGUAAAUUCACAACUGAACUGAGCAGUCAAGGCUAUGGGAAUCCUUCGCC----------CCCAAGCCCACUCCCACUCCCCCCCUCCA
...((((.(((((((((((......)))))..)))).)).))))..((((.((((...........----------))))))))..................... ( -21.00)
>consensus
UCCAACUGCUUGUUGUUGUAAAUUUACAACUAAGCUGAGCAGGCGGGCCUUCGGAAACCCGAAGCAGGAAAGGAAUCCCCUGCCGACCACCACCUACCAC_C___
.....(((((((((((((((....))))))..))).))))))..(((...((((....)))).(((((..........))))).........))).......... (-17.76 = -18.52 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:07 2006