Locus 770

Sequence ID 2L_DroMel_CAF1
Location 2,187,708 – 2,187,807
Length 99
Max. P 0.750373
window1261

overview

Window 1

Location 2,187,708 – 2,187,807
Length 99
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 78.93
Mean single sequence MFE -37.63
Consensus MFE -23.96
Energy contribution -24.30
Covariance contribution 0.34
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.64
SVM decision value 0.47
SVM RNA-class probability 0.750373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2187708 99 + 22407834
UC-CCUCUUUCGCUCUGCUUUUUUUGCUUCCGCUUUGCCAGCAGGAUACAGGAUGCAGGAUGCAGGAUGGGGGACGGGAGACGGGAGAGGAGCGCAGAGA
..-(((((..((((((((...((((((.(((......((....)).....))).)))))).))......(....).)))).))..))))).......... ( -34.80)
>DroSim_CAF1 29357 99 + 1
UC-CCUCUUUCGCUCUGCUCUUUUUGCUUCCGCUUUGCCAGCAGGAUACAGGAUGCAGGAUGCAGGAUGGGGGACGGGAGGCGGGAGAGGAGCGCAGAGG
..-(((((..((((((.((((...(((((((((....((.(((..........))).))..))......(....).))))))))))).)))))).))))) ( -39.20)
>DroEre_CAF1 31866 79 + 1
GCUCCUCGUUCGCUCUGCUCUUUCUGCUUCCGCUUUGCCAGCAGGAUACAGGAUGCAGGAUGCAGAGUGAG------------------GAGAGC---GG
((((.((.((((((((((...((((((.(((......((....)).....))).)))))).))))))))))------------------))))))---.. ( -38.90)
>consensus
UC_CCUCUUUCGCUCUGCUCUUUUUGCUUCCGCUUUGCCAGCAGGAUACAGGAUGCAGGAUGCAGGAUGGGGGACGGGAG_CGGGAGAGGAGCGCAGAGG
.....(((((((.(((((...((((((.(((......((....)).....))).)))))).))))).))))))).......................... (-23.96 = -24.30 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:09 2006