| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 266,473 – 266,565 |
| Length | 92 |
| Max. P | 0.659581 |
| Location | 266,473 – 266,565 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 85.77 |
| Mean single sequence MFE | -30.26 |
| Consensus MFE | -22.22 |
| Energy contribution | -23.14 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 266473 92 + 22407834 GUCUCAG------CCUGUUCACCCGGAAUUAUAUUUUCUGGGGAAUC---UUCACUUCCCAGGGAAUGGGGCUUCCGUACUGGAGUCACUACUCCCUUUGC .......------...((((.(((((((.......))))))))))).---..........(((((.(((((((((......)))))).))).))))).... ( -28.80) >DroSec_CAF1 58260 92 + 1 GGCUCAG------CCUGUUCACCGGGAAUUAUGUUUUCUGGGGAAUC---UUCACUUCCCAGGGAAUGGGGCUUCCUUACUGGAGUCACUACUCCCUUUAC (((...)------))........((((.....(((..(((((((...---.....)))))))..)))((((((.((.....)))))).))..))))..... ( -29.60) >DroSim_CAF1 71452 92 + 1 GGCUCAG------CCUGUUCACCGGGAAUUAUGUUUUCUGGGGAAUC---UUCACUUCCCAGGGAAUGGGGCUUCCUUACUGGAGUCACUACUCCCUUUAC (((...)------))........((((.....(((..(((((((...---.....)))))))..)))((((((.((.....)))))).))..))))..... ( -29.60) >DroEre_CAF1 64394 92 + 1 GGCUCAG------CCUGGUCACCGGGAAUUAUGUUUUCUGGGGUAUC---UUCACUUCCCAGGGAAUUGGGCUUUCUGACCGGAGUGACUACUCCCUUUAC ((((((.------(((((...)))))......(((..((((((....---......))))))..)))))))))........(((((....)))))...... ( -30.60) >DroYak_CAF1 62215 101 + 1 GGCUCACCGUUCCCCUGGUCACCGAGAAUAGUGUUUUCUGUAGAAUGGGGAUCACUUCCCAGGGAAUGGGGUUUUCUGACCGGAGAGACUACUCCCUUUGC ......((((((((....((((.((((((...)))))).)).)).((((((....))))))))))))))((((....))))((((......))))...... ( -32.70) >consensus GGCUCAG______CCUGUUCACCGGGAAUUAUGUUUUCUGGGGAAUC___UUCACUUCCCAGGGAAUGGGGCUUCCUUACUGGAGUCACUACUCCCUUUAC (((((........((((.....))))......(((..(((((((...........)))))))..))).)))))........((((......))))...... (-22.22 = -23.14 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:09 2006