Locus 7699

Sequence ID 2L_DroMel_CAF1
Location 21,770,307 – 21,770,415
Length 108
Max. P 0.623324
window12367

overview

Window 7

Location 21,770,307 – 21,770,415
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 83.70
Mean single sequence MFE -36.47
Consensus MFE -23.94
Energy contribution -25.80
Covariance contribution 1.86
Combinations/Pair 1.17
Mean z-score -2.47
Structure conservation index 0.66
SVM decision value 0.18
SVM RNA-class probability 0.623324
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21770307 108 + 22407834
UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGUUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAAUCGGCCUUUAUUUAACCCAUGGUUGGAAACCAC
(((((((((..((((...(((((((......(((((......)))))..)))))))...((.((((((....))))))))..........)))))))))))))..... ( -37.10)
>DroSec_CAF1 12274 108 + 1
UUCCAGCCACCUGGGGUAGCAAAGUAUCGCAAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC
((((((((((...((((.(((((((......(((((......)))))..)))))))...((.((((((....)))))))).........))))))))))))))..... ( -40.30)
>DroSim_CAF1 5052 108 + 1
UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC
((((((((((...((((.(((((((......(((((......)))))..)))))))...((.((((((....)))))))).........))))))))))))))..... ( -40.30)
>DroEre_CAF1 14609 108 + 1
UUCCAGCCACCUGGGGUAGCAAAGCAUGGCCAGGGGCCGACUCUCCUCCACCUUGCCCUGCACGGUUUUGUAAAAUCGCCCCUUAUUUAGCCCGUGGUUGGAAACCAC
((((((((((..(((.(((....(((.(((.(((((..(.....)..)).))).))).))).((((((....))))))........))).)))))))))))))..... ( -39.90)
>DroYak_CAF1 577 108 + 1
UUCCAGCCACCUGGGAUAGCAAAGCAUGGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGAUUGGAAACCAC
(((((..(((..(((...((((((..(((..(((((......))))))))))))))...((.((((((....))))))))..........))))))..)))))..... ( -35.10)
>DroAna_CAF1 11771 108 + 1
CUCCAACCAGGGGGGAUAAAAGAUAGCGGCCAGCGGCAGAUUCACUUCCACUUGUCCCUGGACCGACUCGGAAAAUUCAUCUUCCUUCAAGCCAUGAUCGGAUACUAC
......(((((((.((.........((.....))((.((.....)).))..)).))))))).((((...((((........)))).(((.....)))))))....... ( -26.10)
>consensus
UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC
((((((((((..(((...(((..(((.....(((((......)))))......)))..))).((((((....))))))............)))))))))))))..... (-23.94 = -25.80 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:04 2006