Locus 7692

Sequence ID 2L_DroMel_CAF1
Location 21,744,471 – 21,744,573
Length 102
Max. P 0.649354
window12355

overview

Window 5

Location 21,744,471 – 21,744,573
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -16.97
Consensus MFE -14.30
Energy contribution -14.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.84
SVM decision value 0.24
SVM RNA-class probability 0.649354
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21744471 102 + 22407834
UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUUAAUUCUGACGAAGGCCAAAAACGAGAACGCAAUGUACAUAUGUACAUAAUAUACAUACAUA
(((...(((((((.....(((((...(((.((....))))).....))))).)))))))....(....))))((((((....)))))).............. ( -20.90)
>DroSec_CAF1 325 78 + 1
UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC------------------------ACAUGCAUA
((((..(((((((....((.........))((.(((((......))))).)))))))))....(.....------------------------.).)))).. ( -15.70)
>DroSim_CAF1 326 78 + 1
UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC------------------------ACAUACAUA
......(((((((....((.........))((.(((((......))))).)))))))))..........------------------------......... ( -14.30)
>consensus
UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC________________________ACAUACAUA
......(((((((....((.........))((.(((((......))))).)))))))))........................................... (-14.30 = -14.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:53 2006