Locus 7691

Sequence ID 2L_DroMel_CAF1
Location 21,738,621 – 21,738,741
Length 120
Max. P 0.879031
window12353 window12354

overview

Window 3

Location 21,738,621 – 21,738,712
Length 91
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -21.70
Consensus MFE -18.89
Energy contribution -18.23
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.87
SVM decision value 0.91
SVM RNA-class probability 0.879031
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21738621 91 + 22407834
----------------------GUUUUUAAUUGGACUAUUUGCCAGGUACAUUUAGUUUACACAUUUCAAGACUAUUUUCCGUUUAGGAAAUUUUUGUAU-UGGUACCUUAGUC
----------------------...........(((((..((((((.((((..((((((..........)))))).(((((.....)))))....)))))-)))))...))))) ( -19.60)
>DroSec_CAF1 7501 114 + 1
CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCAUUGGAAAUUUUUGUAUUUGGCUCCUUAGUC
...(((((.(.((((......))))..).)))))((((...((((((((((...(((((..........)))))((((((......))))))...))))))))))....)))). ( -24.90)
>DroSim_CAF1 12905 113 + 1
CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCUUUGGAAAUUUUUGUAU-UGGCUCCUUAGUC
...(((((.(.((((......))))..).)))))((((...(((((.((((...(((((..........)))))((((((......))))))...)))))-))))....)))). ( -20.60)
>consensus
CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCUUUGGAAAUUUUUGUAU_UGGCUCCUUAGUC
.................................(((((...((((.(((((...(((((..........)))))..(((((.....)))))....))))).))))....))))) (-18.89 = -18.23 +  -0.66)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 4

Location 21,738,637 – 21,738,741
Length 104
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 92.36
Mean single sequence MFE -22.37
Consensus MFE -17.77
Energy contribution -18.33
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -2.29
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.608672
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21738637 104 - 22407834
AGAAACUGCUAUGAAUCUGGCUCACUUAAGACUAAGGUACCA-AUACAAAAAUUUCCUAAACGGAAAAUAGUCUUGAAAUGUGUAAACUAAAUGUACCUGGCAAA
......(((((.(.((.(((..((((((((((((..(((...-.))).....(((((.....))))).)))))))))...)))....))).))...).))))).. ( -19.30)
>DroSec_CAF1 7539 105 - 1
AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCAAAUACAAAAAUUUCCAAUGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA
......(((((.(((..((((((.((((....))))))))))..((((...(((((.((.((........)).))))))).)))).........))).))))).. ( -22.30)
>DroSim_CAF1 12943 104 - 1
AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCA-AUACAAAAAUUUCCAAAGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA
......(((((.(((..((((((.((((....))))))))))-.((((...(((((.(((((........)))))))))).)))).........))).))))).. ( -25.50)
>consensus
AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCA_AUACAAAAAUUUCCAAAGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA
......(((((.(((..((((((.((((....))))))))))..((((...(((((....((........))...))))).)))).........))).))))).. (-17.77 = -18.33 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:52 2006