Locus 7687

Sequence ID 2L_DroMel_CAF1
Location 21,672,814 – 21,672,912
Length 98
Max. P 0.760471
window12348

overview

Window 8

Location 21,672,814 – 21,672,912
Length 98
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 78.57
Mean single sequence MFE -22.60
Consensus MFE -15.17
Energy contribution -16.70
Covariance contribution 1.53
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.67
SVM decision value 0.50
SVM RNA-class probability 0.760471
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21672814 98 + 22407834
U--AACAUCCAACAAAAGUAUAGGAAACUUUAUAUGUGUACCGUCGAAGAGUGCAUAUUUUAGGUUUCGGACAAAAU-------------CCCAAUAAAGAUUUAAUAAGAAU
.--....(((.((....))....(((((((...(((((((((......).))))))))...))))))))))..((((-------------(........)))))......... ( -19.60)
>DroSec_CAF1 6747 110 + 1
AGUUGGAUUU---GAUUGUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU
.(((((((((---.((((.....(((((((...(((((((((......).))))))))...)))))))((((...(((......))))))).))))..)))))))))...... ( -24.50)
>DroSim_CAF1 6717 110 + 1
AGUUGGAUUU---GAUUGUAUAUUAAACUCUACAUGUGUACCGACGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU
.(((((((((---.((((.....(((((.(((.(((((((((......).))))))))..))))))))((((...(((......))))))).))))..)))))))))...... ( -23.70)
>consensus
AGUUGGAUUU___GAUUGUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU
.((((((((..............(((((((...(((((((((......).))))))))...)))))))((.....(((......)))....))......))))))))...... (-15.17 = -16.70 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:46 2006