Locus 768

Sequence ID 2L_DroMel_CAF1
Location 2,184,972 – 2,185,072
Length 100
Max. P 0.995970
window1259

overview

Window 9

Location 2,184,972 – 2,185,072
Length 100
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 73.39
Mean single sequence MFE -27.48
Consensus MFE -16.72
Energy contribution -18.22
Covariance contribution 1.50
Combinations/Pair 1.13
Mean z-score -2.37
Structure conservation index 0.61
SVM decision value 2.64
SVM RNA-class probability 0.995970
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2184972 100 - 22407834
CAGAUCGCGGGACAGGUU------------ACCAUUACCAUUACCAUCUUGUGC-GCCGUCUU-------CUUUAGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA
..((..((((((((((((------------....................((((-(((((...-------.....)))))))))....((...)).))))))......))))))...)). ( -28.80)
>DroEre_CAF1 29127 112 - 1
CAGAUCGCGGGACAGGUUAGCAUUACCAUUACCAUUACCAUUACCAUCUUGUGC-GCCGUCUU-------CUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA
..((..((((((((((((.(((................((.........))(((-((((((..-------....))))))))).........))).))))))......))))))...)). ( -33.60)
>DroYak_CAF1 29951 119 - 1
CAGAUCGCGGGACAGGUUAGCAUUACCAUUACCAUUACCAUUACCAUCUUGUGC-GCCGUCUUCUUUCUUCUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCCUCUCGUCUUUCA
..((..((((((((((((.(((................((.........))(((-((((((.............))))))))).........))).))))))......))))))...)). ( -32.22)
>DroAna_CAF1 30103 84 - 1
CGGGUCUUCAGACAGGUU------------------------GCCAUCUUGUAGAUGCAUCUU-------C-----CAAGGCAUUACCGCAUUGCAAACCUGAAUUCUUCAAGUUUUUCA
.(((.(((.(((((((((------------------------((...((((.(((....))).-------.-----))))((......))...)).))))))...)))..)))...))). ( -15.30)
>consensus
CAGAUCGCGGGACAGGUU____________ACCAUUACCAUUACCAUCUUGUGC_GCCGUCUU_______CUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA
..((..((((((((((((.....................................((((((.............))))))(((.........))).))))))......))))))...)). (-16.72 = -18.22 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006