Locus 7674

Sequence ID 2L_DroMel_CAF1
Location 21,611,207 – 21,611,321
Length 114
Max. P 0.965842
window12328

overview

Window 8

Location 21,611,207 – 21,611,321
Length 114
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 82.96
Mean single sequence MFE -39.52
Consensus MFE -31.16
Energy contribution -32.44
Covariance contribution 1.28
Combinations/Pair 1.21
Mean z-score -2.32
Structure conservation index 0.79
SVM decision value 1.59
SVM RNA-class probability 0.965842
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21611207 114 - 22407834
AUCGAGUAAGAGAGAGCCGAAUAUCGACUCGACUCUCGCAGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGCCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA
.(((((..((((.(((.((.....)).)))..))))..)..((((((((.-((.......))))).........(((((((((((........))))).))))---))))))))))). ( -39.30)
>DroSec_CAF1 70354 114 - 1
AACGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGUCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA
..(((((((..(((((((((........))))))))).)))))(((((((-((((........(((.........)))((((((.......))))))).))).---.))))))))).. ( -45.20)
>DroSim_CAF1 9378 114 - 1
AACGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGUCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA
..(((((((..(((((((((........))))))))).)))))(((((((-((((........(((.........)))((((((.......))))))).))).---.))))))))).. ( -45.20)
>DroEre_CAF1 6612 105 - 1
---GAAUAGAAGAGAGU-------CAAAUUUACACUCGCUGCUACUGCUCCCACCAAUACUGAGCUUUUUUCUAUGGCGCCGCCGAUCAACGUCGGCGAGUGC---UAAGCAGUCGAA
---..............-------...........((((((((...((((...........)))).........(((((((((((((....))))))).))))---))))))).))). ( -34.00)
>DroYak_CAF1 5516 115 - 1
---UAGUAGAAGAGAGUUUGAUUUCCAAUUUGCUCUCGCUGCUACUGCUCCCACCAAUACUGAGAAUUCUUCCAUGGCGCCGCCGAUCAAAGGGGGCGAGUGCUUCUAAGUAGUCGAA
---((((((..(((((((((.....)))...)))))).))))))..((((((.........(((....)))...((((...))))......))))))((.((((....)))).))... ( -33.90)
>consensus
A_CGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU_CACCAAAACUGAGCUUUUCUCCAUGGCGCCGCCGAUCAAAGGCGGCGAGUGC___UAAGUAGUCGAA
....(((((..(((((((((........))))))))).)))))((((((............(((.....)))(((..(((((((.......))))))).)))......)))))).... (-31.16 = -32.44 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:29 2006