Locus 7670

Sequence ID 2L_DroMel_CAF1
Location 21,490,859 – 21,490,979
Length 120
Max. P 0.514756
window12323

overview

Window 3

Location 21,490,859 – 21,490,979
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -24.14
Consensus MFE -20.96
Energy contribution -21.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.87
SVM decision value -0.04
SVM RNA-class probability 0.514756
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21490859 120 + 22407834
UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGAGGCAUUGUUCACGUUACUUAUAUUUUCACAAACACAAUUCACUUA
......((((.((....((((((((......((((..((((((((.....)))).....(((..........)))))))..)))))))))))).......)))))).............. ( -25.50)
>DroEre_CAF1 172361 120 + 1
UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUCACUUAUAAUUUCACAAACACAAUUCACUUA
......((((.(((...(((((.((((....))))..((((((((.....))))(((...............)))))))....)))))..))).))))...................... ( -25.36)
>DroYak_CAF1 159814 120 + 1
UUUUUCUUGUCGGUCUUGGUGAUAUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUUACUUAUAUUUUCACAAACACAAUUCACUUA
.......(((.(((...(((((..(((....)))...((((((((.....))))(((...............)))))))....)))))..))).)))....................... ( -21.56)
>consensus
UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUUACUUAUAUUUUCACAAACACAAUUCACUUA
......((((.(((..(((..(.((((....)))).)..))))))......((((((...............))))))........................)))).............. (-20.96 = -21.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:24 2006