| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,184,520 – 2,184,612 |
| Length | 92 |
| Max. P | 0.644594 |
| Location | 2,184,520 – 2,184,612 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.81 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2184520 92 + 22407834 -----------AAAAGUGUUGCAGACACGCUACCGUCGAAACGAC-AGCGAUACCGAAUCCG--AUGUGGGUACCCACAC-ACCGCA--------ACAUCGCUUUCCGACCUGGA -----------....(((((((.....((((...((((...))))-))))...........(--.(((((....))))))-...)))--------)))).....(((.....))) ( -24.80) >DroSim_CAF1 25777 85 + 1 -----------AAAAGUGUUGCAGACACGCUACCGUCGAAACGAC-AGCGAUACCAAAUCCG--AUGUGGGUACCCACAC----------------CAUCGCUUUCCGACCUGGA -----------....(((((...)))))....((((((....((.-((((((..(......)--.(((((....))))).----------------.)))))).))))))..)). ( -21.80) >DroAna_CAF1 29641 115 + 1 GGCAAAAAGGCAAAAGUGUUACAGACACGCUACCGUCUAACCGUCUAACGAUACGGAAUCCGAGAUGUGGGUACCCAUACCACCAUACUACCCAUAUCUUGUAUUCCGAUUUGGG .......((((...(((((.......)))))...))))..(((((....))).((((((.(((((((((((((...............))))))))))))).))))))....)). ( -37.36) >consensus ___________AAAAGUGUUGCAGACACGCUACCGUCGAAACGAC_AGCGAUACCGAAUCCG__AUGUGGGUACCCACAC_ACC__A________ACAUCGCUUUCCGACCUGGA ...............(((((((.(((........)))..........)))))))....(((....(((((....)))))...................(((.....)))...))) (-14.26 = -14.27 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:06 2006