Locus 7668

Sequence ID 2L_DroMel_CAF1
Location 21,372,335 – 21,372,439
Length 104
Max. P 0.500000
window12318

overview

Window 8

Location 21,372,335 – 21,372,439
Length 104
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 84.94
Mean single sequence MFE -21.27
Consensus MFE -17.69
Energy contribution -19.26
Covariance contribution 1.57
Combinations/Pair 1.15
Mean z-score -1.45
Structure conservation index 0.83
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21372335 104 + 22407834
UACAUAUUAUUUGAAAAAAGGGUUCUGGAUUCUAUAUUCUUUUUCAUUGUGAUGUUCUCUGUACUAAGUGUUUCGCA--------CAAUAUUCCAGAUAGAAAGAAAUACAA
...(((((((.(((((((.((((...(....)...)))))))))))..)))))))............(((((((...--------...((((...))))....))))))).. ( -14.70)
>DroSec_CAF1 84189 108 + 1
UACAUGUUAUUUAGAAGAAGAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA----UAUAU
...(((((((...((((((((((.((((...))))))))))))))...)))))))..(((((......(((((((.....))))))).........)))))..----..... ( -27.16)
>DroSim_CAF1 70930 108 + 1
UACAUAUUAUUUAGAAAAAUAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA----UAUAA
...(((((((...((((((....(((((...)))))...))))))...)))))))..(((((......(((((((.....))))))).........)))))..----..... ( -21.96)
>consensus
UACAUAUUAUUUAGAAAAAGAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA____UAUAA
...(((((((...((((((((((.((((...))))))))))))))...)))))))..(((((......(((((((.....))))))).........)))))........... (-17.69 = -19.26 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:19 2006