Locus 7666

Sequence ID 2L_DroMel_CAF1
Location 21,362,204 – 21,362,324
Length 120
Max. P 0.739368
window12316

overview

Window 6

Location 21,362,204 – 21,362,324
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.50
Mean single sequence MFE -43.54
Consensus MFE -25.39
Energy contribution -26.39
Covariance contribution 1.00
Combinations/Pair 1.31
Mean z-score -1.71
Structure conservation index 0.58
SVM decision value 0.45
SVM RNA-class probability 0.739368
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21362204 120 + 22407834
UGAAGGCGAUGGGCGUCGCCGUGGACAUGGUGGCUAGUGGUACAGCUCCCAAGAUAAUUCAGCCGGAAGUGGGGGCAACCUACGACCCGGCUAUGUUUAAAACAGAAAAUCAGGUUAUCA
....((((((....)))))).......(((..(((........)))..))).(((((((.((((((..(((((.....)))))...)))))).(((.....)))........))))))). ( -41.80)
>DroPse_CAF1 43270 120 + 1
UCAAGGCCAUGGGUGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGAUCGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCCGAUAAUCAGUUGAUCA
....((((.((..((((((((.((.(..(((((((.......(((((((...............)))).))).)))))))...).))))))))))..)).))))................ ( -49.36)
>DroGri_CAF1 55157 120 + 1
UUAAGGCAAUGGUCCUGGCCGUGGACAUGGUCGCCAAGGGCACGGCACCAAAGAUCGUGCAAACUGAGGUGGGCGCCACCUAUGAUCCCGCCAUGUUUCGGGCAGAGAACCAGAUACUGA
...((....((((((((.(((.((((((((.((....(((((((((......).))))))......((((((...)))))).....))))))))))))))).))).).))))....)).. ( -44.30)
>DroMoj_CAF1 56045 120 + 1
UGAAGGCCAUGGGCUUGGCUGUGGACAUGGUAGCCGAUGGCACAGCGCCCAAGAUAGUUCAGACUGAGGUGGGCGCCACCUACGAUCCAGCCAUGUUCAAGGUGGAGAAUCAACAGAUUU
.....(((.(((((.((((((.((.(..(((.(((...)))...(((((((...((((....))))...))))))).)))...).)))))))).))))).)))...(((((....))))) ( -44.60)
>DroAna_CAF1 37949 120 + 1
UCAAAGCUAUGGGAGUUGCCGUCGAUAUGGUAGCCAAUGGAUCUGCCCCCAAAAUAACACAGACAGAGGUGGGUGCUACCUACGAUCCGGCCAUGUUCAAAGCGGAGAACCAGGUGCUCA
.....(((.((((.((.(((((((.((.((((((..........((((((.................)).)))))))))))))))..)))).)).)))).))).(((.((...)).))). ( -31.83)
>DroPer_CAF1 44313 120 + 1
UCAAGGCCAUGGGUGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGAUCGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCCGAUAAUCAGUUGAUCA
....((((.((..((((((((.((.(..(((((((.......(((((((...............)))).))).)))))))...).))))))))))..)).))))................ ( -49.36)
>consensus
UCAAGGCCAUGGGCGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGGUGGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCAGAGAAUCAGGUGAUCA
.....(((.((((((((((((.......(((.(((...)))...(((((......................))))).))).......)))))))))))).)))................. (-25.39 = -26.39 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:18 2006