Locus 7663

Sequence ID 2L_DroMel_CAF1
Location 21,349,097 – 21,349,194
Length 97
Max. P 0.680838
window12311

overview

Window 1

Location 21,349,097 – 21,349,194
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.23
Mean single sequence MFE -18.49
Consensus MFE -14.56
Energy contribution -13.78
Covariance contribution -0.77
Combinations/Pair 1.52
Mean z-score -1.15
Structure conservation index 0.79
SVM decision value 0.31
SVM RNA-class probability 0.680838
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21349097 97 + 22407834
UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAUAAUUAAAGAAAGAAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC
...........(((.((..-.((((((((...-.............)))))))).....((((((((((((........)))))))))))))).))).. ( -21.09)
>DroSec_CAF1 58711 96 + 1
UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAGAAUAAAA-AAAACAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC
..((...(((((((.....-....(((((...-.....))))).....-....)))))))(((((((((((........))))))))))).))...... ( -18.47)
>DroSim_CAF1 45197 96 + 1
UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAGAAUAAAA-AAAACAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC
..((...(((((((.....-....(((((...-.....))))).....-....)))))))(((((((((((........))))))))))).))...... ( -18.47)
>DroEre_CAF1 41373 97 + 1
UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-GAGAAAUGAAUAAAAAAAAGAAAUCAUUAUAGGUUUUCAGUGCAUAGAGAACUUGGAAGAGUACAC
...........(((.((..-.((((((((...-)))))).))....................(((((((((........)))))))))...)).))).. ( -15.50)
>DroYak_CAF1 45892 97 + 1
UAUCAGGGUAAGUUGACAG-AACUUUCUUCCU-AAGAAAAUAUUAUAUGAAAGUAUUCAUUUCAGGUUUUCAGUGCAUAGAGCACUUGGAAGAGUACAC
.......(((((((.....-))))(((((((.-..((((((.....(((((....))))).....))))))(((((.....))))).)))))))))).. ( -23.00)
>DroAna_CAF1 29604 99 + 1
UACCAGGGUAAAUAUUUAUUAGCCUUUUAAUAUUAGAAAGCAUAUUUAUAUAGAAUCCCCUUUAGGGUAUCAAUCCAUUGAGUGUUUGGAGGAGUAUAC
.....((((..((((..((..((.(((((....))))).))..))..))))...))))((((((((...((((....))))...))))))))....... ( -14.40)
>consensus
UAUCAGGGUAAGUGGUCAG_AUCUUUCUUACA_AAGAAAAGAAUAAAA_AAAGAAUUCAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC
...........(((.((......((((((....))))))....................((((((((((((........)))))))))))))).))).. (-14.56 = -13.78 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:13 2006