| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,273,517 – 21,273,631 |
| Length | 114 |
| Max. P | 0.593082 |
| Location | 21,273,517 – 21,273,631 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.73 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.46 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21273517 114 + 22407834 -----AAGUUGUGGACGUGGCAGCUAUAUGUGUUUCCUUCCCGUCAUAAAAAAAGUUUUACAACUUUCAGGAAGGAGGCAUGAAUACUAUGGAAUAGGAAAAUAUUUUCAAAUUUCAUU -----.((((((.......))))))....((((((((((((.(........((((((....))))))).)))))))))))).......(((((((..((((....))))..))))))). ( -28.20) >DroSec_CAF1 12660 97 + 1 CAGUCAAGUUGUGAACGUGACAGCUAUUUGUGUUUGGUCGCCGUCAUGAAAAAAGUUUCACAACUUUCAA----------------------AAUAGGAAGUUAUUUACAAUUUUCAAG .....((((((((((((((((.((.(((.......))).)).)))))).............(((((((..----------------------....))))))).))))))))))..... ( -22.20) >DroSim_CAF1 13858 96 + 1 CAGUCAAG-UGUGAACGUGACAGCUAUUUGUGUUUGGUCGCCGUCAUGAAAAAAGUUUCACAACUUUCAA----------------------AAUAGGAAGUUAUUUACAAUUUUCAAG ........-((((((((((((.((.(((.......))).)).)))))).............(((((((..----------------------....))))))).))))))......... ( -19.00) >consensus CAGUCAAGUUGUGAACGUGACAGCUAUUUGUGUUUGGUCGCCGUCAUGAAAAAAGUUUCACAACUUUCAA______________________AAUAGGAAGUUAUUUACAAUUUUCAAG .....((((((((((((((((.((...............)).))))))........))))))))))..............................(((((((......)))))))... (-14.45 = -15.46 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:53 2006