Locus 7643

Sequence ID 2L_DroMel_CAF1
Location 21,225,863 – 21,225,969
Length 106
Max. P 0.537230
window12282

overview

Window 2

Location 21,225,863 – 21,225,969
Length 106
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.70
Mean single sequence MFE -23.85
Consensus MFE -18.90
Energy contribution -20.15
Covariance contribution 1.26
Combinations/Pair 1.25
Mean z-score -1.00
Structure conservation index 0.79
SVM decision value 0.01
SVM RNA-class probability 0.537230
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21225863 106 + 22407834
UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCAAGUGGCUUCCAGUCGGGUACAUAUUGCACAAGAAAUGUUAUACGCAUA
...((((....))))....-----------.--.(((((((.(.((((((((....((.(((((((..((....))...)))))))))....)))))))).).)))))))......... ( -28.80)
>DroPse_CAF1 23039 111 + 1
UAAUUCACAGGUGAAAAAUCAACGCUGCGACUGCAA-UUUUCUCGUGCAAUAAUUUUCGGAAAA-----UCCACGCCACCCAAAA--GCCCCCAUUGUGCAAAAAGGAAUCUACACAAA
.........((((..........((.((((......-.....))))))..........((....-----.)).))))........--.......(((((..............))))). ( -13.94)
>DroSec_CAF1 16447 106 + 1
UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUUUUUUCCUCGAUUGGCAUUGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAAA
...((((....))))....-----------.--.(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... ( -26.52)
>DroSim_CAF1 16588 106 + 1
UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUUAUUUCCUCGAUUGGCAUUGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAGA
...((((....))))....-----------.--.(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... ( -26.52)
>DroEre_CAF1 17259 106 + 1
UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCGAGUGGCUUCCAGUCGGGCACAUAAUGCACAAGAAAUGUUAUACGCAGA
...((((....))))....-----------.--.(((((((.(.(((((.((.....(((((((((..((....))...)))))))))....)).))))).).)))))))......... ( -23.90)
>DroYak_CAF1 16886 104 + 1
UAAUUCACAGGUGAA-AAU-----------C--CGAUAU-UGUCGUGCAAUAAUUUUCCCGAUUGCCAUCGAGUGGCUUCCAGUCGGGCACAUAAUGCAUAAGAAAUGUUAUACGCAAA
...((((....))))-...-----------.--.(((((-(...(((((.((.....((((((((((((...)))))....)))))))....)).)))))....))))))......... ( -23.40)
>consensus
UAAUUCACAGGUGAAAAAU___________C__CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAAA
...((((....))))...................(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... (-18.90 = -20.15 +   1.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:46 2006