Locus 7640

Sequence ID 2L_DroMel_CAF1
Location 21,216,974 – 21,217,085
Length 111
Max. P 0.570787
window12278

overview

Window 8

Location 21,216,974 – 21,217,085
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 79.54
Mean single sequence MFE -38.07
Consensus MFE -19.91
Energy contribution -20.67
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -1.97
Structure conservation index 0.52
SVM decision value 0.07
SVM RNA-class probability 0.570787
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21216974 111 + 22407834
ACAGCAUCGGGUAACCCAGCUUCUGAUCCGAAACCAAGGGGUAGACGAAAAAAGGUUACACCCCUUAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACGGCU
...((...(((...))).(((((((..(.((..(((((((((.(((........)))..))))))).))..)).)...)))))))........))(((((......))))) ( -40.80)
>DroVir_CAF1 8659 96 + 1
C---------------CAGCGCCCGAUUCCAAGCCGCGUGGUCGCCGAAAAAAGGUGACGCCUCUGCGGGAUCAACUGCAGAAGCAGCAAACCGCUGCCGCUGUCACCGCC
.---------------..(((((((...........)).)).)))........((((((((.(((((((......))))))).(((((.....))))).)).))))))... ( -37.70)
>DroSec_CAF1 7101 111 + 1
ACAGCUUCGGGUAACCCAGCGCCUGAUCCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU
...((((((((...))).(((.((((((((....).((((((.(((........)))..))))))...))))))).))).)))))....((((((....))))))...... ( -39.30)
>DroSim_CAF1 7170 111 + 1
ACAGCUUCGGGUAACCCAGCGCCUGAACCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU
...((((((((...))).(((.((((.(((....).((((((.(((........)))..))))))...)).)))).))).)))))....((((((....))))))...... ( -34.70)
>DroYak_CAF1 7133 111 + 1
ACAGUCUCGGGAAGCCCAGCGCCUGAUCCGAAACCGAGGGGUAGACGAAAAAAGGUUACACCUCUCAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACGGCG
........(((...)))..(((((((((((....)(((((((.(((........)))..)))))))..))))))(((((....)))))....))))((((......)))). ( -41.40)
>DroMoj_CAF1 7946 108 + 1
CCCGGAACAG---GCCCACCACCUGAUACCAAGCCGCGUGGUCGUCGAAAAAAGGUAACGCCUCUGCGGGAUCAGCUGCAGAAGCAGCAAACCGCCGCAGCUGUCACAGCG
...((..(((---(.......))))...))..((.((((((((.(((...(.(((.....))).).))))))))(((((....)))))....))).)).((((...)))). ( -34.50)
>consensus
ACAGCAUCGGGUAACCCAGCGCCUGAUCCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU
................(((((((((((((...(((....)))..........(((.....))).....))))))(((((....))))).......)).)))))........ (-19.91 = -20.67 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:42 2006