Locus 7638

Sequence ID 2L_DroMel_CAF1
Location 21,215,516 – 21,215,636
Length 120
Max. P 0.792605
window12276

overview

Window 6

Location 21,215,516 – 21,215,636
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.50
Mean single sequence MFE -42.60
Consensus MFE -33.83
Energy contribution -32.83
Covariance contribution -0.99
Combinations/Pair 1.55
Mean z-score -2.27
Structure conservation index 0.79
SVM decision value 0.59
SVM RNA-class probability 0.792605
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21215516 120 - 22407834
CAGCCUGGGUGGCUAGCUUCUUUAGCUUAGGUGAUUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUUGCGGCCACCGUCUUUUUCUUUUUGGAAGAAGGAUUCCAGGCACCAUCCU
..((((((((((((((((.....))))...(..(.....((((...))))..(((.....)))......)..)))))))).(((((((((....)))))))))....)))))........ ( -39.20)
>DroSec_CAF1 5648 120 - 1
CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUCGCGGCCACCGUCUUCUUUUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU
..((((((((((((((((.....)))).(((((.(..((....)).).)))))((.(((......))).))..))))))).(((((((((....)))))))))....)))))........ ( -43.40)
>DroSim_CAF1 5716 120 - 1
CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUCGCGGCCACCGUCUUCUUCUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU
..((((((((((((((((.....)))).(((((.(..((....)).).)))))((.(((......))).))..))))))).(((((((((....)))))))))....)))))........ ( -46.00)
>DroEre_CAF1 5862 120 - 1
CAGCCUGGUUGGCUAGCUUCUUCAGUUUGGGUGACUUUCUGGCGAUGGCGCCCGACGAAUUCGACUUCUUAGCAGCAACCGUCUUCUUUUUUUUUGAGGAAGGAUUCCAGGCACCAUCUU
..((((((...(((.(((.....((((((((((.((.((....)).)))))))))((....)))))....))))))..((.(((((.........))))).))...))))))........ ( -38.30)
>DroYak_CAF1 5677 120 - 1
CAGCCUGGGUGGCUAGCUUCUUUAGUUUGGGUGACUUUCUGGCGAUGCCAUCCGACGAAUUCGUCUUCUUAGCAGCCACCGUCUUCUUCUUUUUUGAGGAAGGAUUCCAGGCACCAUCUU
..((((((((((((.(((..........(((((.(..((....)).).)))))((((....)))).....)))))))))).((((((((......))))))))....)))))........ ( -46.80)
>DroAna_CAF1 5447 117 - 1
CUGUCUGGGUAAAGGGUUUCUUCAGCUUGGGCGACUUCCGGGCAAUGCCGCUC---GCAUUGGACUUCUUGGCGCCGCUUGCCUUCUUGCGCUUGGAGGAGGGACGCCAGGCACCGUCCU
.((((..(((..(((....)))..)))..)))).....(((((......))))---)....((((..(((((((((.((..(((((........))))))))).)))))))....)))). ( -41.90)
>consensus
CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUAGCGGCCACCGUCUUCUUCUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU
..((((((((((((((((.....))))((((((.(...........).))))))...................))))))).((((((((......))))))))....)))))........ (-33.83 = -32.83 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:40 2006