Locus 7636

Sequence ID 2L_DroMel_CAF1
Location 21,214,912 – 21,215,018
Length 106
Max. P 0.512936
window12274

overview

Window 4

Location 21,214,912 – 21,215,018
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 84.04
Mean single sequence MFE -23.69
Consensus MFE -16.20
Energy contribution -16.82
Covariance contribution 0.61
Combinations/Pair 1.12
Mean z-score -2.00
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.512936
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21214912 106 - 22407834
CCUUCUCA---------CCGUCUUCCUUAUUCCCCACUUCAUCCUCCGUAGGCAGAUCAUCACGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCGCG
........---------.............................(((((((((((......))).)))))......((((((((........))))))))..........))) ( -20.60)
>DroPse_CAF1 6334 112 - 1
CCUUUACGGAGGCAGGAGCCUUCUCCUCGGGCUCCUCCUCAUCCUCU---GGCAAGUCAUCACGUCGCGCCUUCUCCUUGUCCGCCUCGAUAAUGGUGGAAAUGUCCUUGCCACG
......((((((.((((((((.......))))))))))))......(---((((((.(((...(.....)..........((((((........)))))).)))..))))))))) ( -39.40)
>DroSec_CAF1 5044 106 - 1
CCUUCUCA---------CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCUCG
........---------.............................((.(((((((.....((.....))........((((((((........))))))))....))))))))) ( -21.70)
>DroSim_CAF1 5112 106 - 1
CCUUCUCA---------CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCUCG
........---------.............................((.(((((((.....((.....))........((((((((........))))))))....))))))))) ( -21.70)
>DroEre_CAF1 5258 106 - 1
CCUUCUCA---------CCGUCUUCCUUUUCCUCCACAUCUCCCUCCGUUUGCAAAUCAUCGCGACGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG
........---------................................((((........))))((((.(.......((((((((........)))))))).......).)))) ( -18.14)
>DroYak_CAF1 5073 106 - 1
CCUUCUCA---------CCGUCUUCCUUUUCCUUCACAUCGUUCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG
........---------.............................(((((((((((......))).)))))......((((((((........))))))))..........))) ( -20.60)
>consensus
CCUUCUCA_________CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG
..................................................((((((.....((.....))........((((((((........))))))))....))))))... (-16.20 = -16.82 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:38 2006