Locus 7633

Sequence ID 2L_DroMel_CAF1
Location 21,212,050 – 21,212,148
Length 98
Max. P 0.944268
window12268

overview

Window 8

Location 21,212,050 – 21,212,148
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 76.98
Mean single sequence MFE -20.26
Consensus MFE -8.98
Energy contribution -10.18
Covariance contribution 1.20
Combinations/Pair 1.24
Mean z-score -2.27
Structure conservation index 0.44
SVM decision value 1.34
SVM RNA-class probability 0.944268
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21212050 98 + 22407834
AGCGCUAAGGAAUCAGUAUCUGAAUCUUCUCCAACGGAUGGGGAAGAUGAAACAGCAAAAUCGAAAUGUUUGAUUGACCCUUAUGCAGGAAAAACCAA
.(((.(((((..(((((......((((((((((.....)))))))))).(((((.(......)...))))).))))).)))))))).((.....)).. ( -26.70)
>DroSec_CAF1 2026 83 + 1
AGCGCUA---------------AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCAAAAUGUUUGAUUGACCCUUAUGCAGGAAAAAGCAA
.(((((.---------------.((((((((((.....)))))))))).....)))..((((((.....))))))...(((.....))).....)).. ( -19.40)
>DroSim_CAF1 2105 83 + 1
AGCGCUA---------------AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCAAAAUGUUUGAUUGACCCUUAUGCAGGAAAAAGCAA
.(((((.---------------.((((((((((.....)))))))))).....)))..((((((.....))))))...(((.....))).....)).. ( -19.40)
>DroEre_CAF1 2030 98 + 1
AGCGCUAAAGAAUCAAUGUCUAGAUCUUCUUCAAAGGAAGUGGAAGAUGAAACCGCUAACUCGAAAUGUUUAAGUGACCCUUUUGCAGGAAAAACCAA
...((.((((..(((...((((...(((((.....)))))))))...)))...(((((((.......)))..))))...)))).)).((.....)).. ( -15.60)
>DroYak_CAF1 2015 83 + 1
GGCGCUAAAGAAU---------------CUUUAAAGGAAGUGAAAGAUGAAACAGUUAAAUCGAAAUGUUUAAUUGAAUCUUUUGCAGAAAAAGCCAA
(((.........(---------------((.....))).(..((((((....(((((((((......))))))))).))))))..).......))).. ( -20.20)
>consensus
AGCGCUAA_GAAU_________AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCGAAAUGUUUGAUUGACCCUUAUGCAGGAAAAACCAA
.((....................(((((((((.......)))))))))..........((((((.....)))))).........))............ ( -8.98 = -10.18 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:33 2006