Locus 763

Sequence ID 2L_DroMel_CAF1
Location 2,178,684 – 2,178,776
Length 92
Max. P 0.851650
window1252

overview

Window 2

Location 2,178,684 – 2,178,776
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.76
Mean single sequence MFE -32.07
Consensus MFE -19.00
Energy contribution -21.23
Covariance contribution 2.24
Combinations/Pair 1.04
Mean z-score -2.17
Structure conservation index 0.59
SVM decision value 0.79
SVM RNA-class probability 0.851650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2178684 92 + 22407834
UGUCUAGU-UGCUUUCAGGAGCGACUCUUCUACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA
.....(((-(((((....))))))))........((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -34.60)
>DroGri_CAF1 28467 78 + 1
UGUAUUUUUUUUGUUCCGCAG--------CAACACGUCCGCUCACCACGAAAGUUUCUUACGUUUUGACUCA-----------------AAACAUGCGAGUAA
..........((((......)--------))).......((((...((....)).......((((((...))-----------------))))....)))).. ( -10.80)
>DroSec_CAF1 24750 92 + 1
UGUCUAGU-UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA
((...(((-(((((....))))))))...))...((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -35.20)
>DroSim_CAF1 19123 92 + 1
UGUCUAGU-UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA
((...(((-(((((....))))))))...))...((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -35.20)
>DroEre_CAF1 22667 102 + 1
UGUCUAGU-UGCUUUCAGGAGCGACACUUCAACACGUCCGCCCAGCACGGCAGUUUCUGGCGUUUUGACUGCCGAUUCGAUUUCGAUUCGAACAGGCGGCGAA
......((-(((((....))))))).........((.(((((.....((((((((...........)))))))).(((((.......)))))..))))))).. ( -37.20)
>DroYak_CAF1 23442 102 + 1
UGUCUAGU-UGCUUUCAGGAGCGACUCGUCAACACGUCCGCCCAGCACGGCAGUUUCUGGCGUUUUGACUGCCGAUUCGAUUUCGAUUCGAACAGGCGGCGAG
((.(.(((-(((((....)))))))).).))...((.(((((.....((((((((...........)))))))).(((((.......)))))..))))))).. ( -39.40)
>consensus
UGUCUAGU_UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU____UUUUGACUGCCGAUUCG______AUUCGAACAGGCGGCGAA
..........((((....))))............((.(((((.....((((((((...........)))))))).((((.........))))..))))))).. (-19.00 = -21.23 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:01 2006