Locus 7626

Sequence ID 2L_DroMel_CAF1
Location 21,169,337 – 21,169,457
Length 120
Max. P 0.540580
window12256

overview

Window 6

Location 21,169,337 – 21,169,457
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -43.62
Consensus MFE -27.12
Energy contribution -27.52
Covariance contribution 0.39
Combinations/Pair 1.35
Mean z-score -1.56
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.540580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21169337 120 + 22407834
GAUCUCGCCAGGCACAAAAUGCUAAGCUGAAAGCAGCUGCCCUGCUGAAGAAGAAGCCACUGGAGAAGAUCAACCCCAACUCCACACGAGGCAGUGAAAGUGGGAAGAGAAGAGCCAUCG
((((((.(((((((.....)))...(((.....((((......)))).......)))..)))).).)))))...((((.((...(((......)))..))))))................ ( -31.50)
>DroVir_CAF1 8047 120 + 1
GAGCCCGACAGGCGCAGAGCGCCAAACUGAAAGCAGCUGCGCUGCUCAAGAAGAAGCCAUUGGAAAAGGUUAAUCCGAAUUCCACGCGCGGCACCGCAACGGGCAAACGGCGUGCCAUCG
(((((((...(((((...))))).........((.(((((((.(((........)))...(((((..((.....))...))))).)))))))...))..)))))....((....)).)). ( -44.90)
>DroPse_CAF1 6779 120 + 1
GUGCUCGACAAGCGGCGAGCGCAAAGCUGAGAGCGGCUGCCCUGCUGAAAAAGAAGCCGCUGGAGAAAGUCAAUCCAAACUCCACUCGCGGCUCAGAGACGGGCAAGCGGCGAGCCAUCG
(((((((........)))))))...(((....((.(((((((..((((.......((((((((((..............)))))...)))))))))....)))).))).)).)))..... ( -46.35)
>DroGri_CAF1 7214 120 + 1
GUGCACGUCAGGCGCAGAGCGCCAAAGUGAAAGCAGCCGCGCUGCUCAAGAAGAAGCCGCUGGAGAAGGUGAAUCCGAAUUCUACGCGCGGCACGGAGACGGGCAAACGGCGAGCCAUCG
(.((.((((.(((((...))))).........((.(((((((.(((........))).(.(((((..((.....))...))))))))))))).((....)).))....)))).))).... ( -44.90)
>DroMoj_CAF1 8285 120 + 1
GAGCGCGUCAGGCGCAGAGCGCCAAACUAAAAGCAGCAGCGCUGCUCAAGAAGAAGCCGCUGGAGAAGGUCAAUCCGAAUUCCACGCGCGGCACUGAGUCUGGCAAACGACGUGCCAUCG
(.(((((((..((.....))((((.(((...((((((...)))))).........((((((((((..((.....))...)))))...)))))....))).))))....)))))))).... ( -47.70)
>DroPer_CAF1 6829 120 + 1
GUGCUCGACAAGCGGCGAGCGCAAAGCUGAGAGCGGCUGCCCUGCUGAAAAAGAAGCCGCUGGAGAAAGUCAAUCCAAACUCCACUCGCGGCUCAGAGACGGGCAAGCGGCGAGCCAUCG
(((((((........)))))))...(((....((.(((((((..((((.......((((((((((..............)))))...)))))))))....)))).))).)).)))..... ( -46.35)
>consensus
GAGCUCGACAGGCGCAGAGCGCCAAACUGAAAGCAGCUGCCCUGCUCAAGAAGAAGCCGCUGGAGAAGGUCAAUCCGAACUCCACGCGCGGCACAGAGACGGGCAAACGGCGAGCCAUCG
..(((((...((((.....))))........(((((.....))))).........((((((((((..((.....))...)))))...))))).......)))))................ (-27.12 = -27.52 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:22 2006