| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,176,627 – 2,176,717 |
| Length | 90 |
| Max. P | 0.561157 |
| Location | 2,176,627 – 2,176,717 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.31 |
| Energy contribution | -14.31 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2176627 90 + 22407834 -CACCCUAAUUGGAGCUCAACGCUCCGCUUUUGUUUCACUUCACUUCCAUAGAAAA--GUGCAUGCAACAAGAGACUCGU-GAACCGAA-C-----AGA--A-- -(((.......(((((.....))))).((((((((.((...(((((........))--)))..)).))))))))....))-).......-.-----...--.-- ( -21.90) >DroVir_CAF1 19845 92 + 1 -CAACCCAAUUGGAGCUUAACGCUCCGCUUUUGUUUCA-----CUUCCAUAGAAAAAAGUGCAUGCAACAAGAGACCCGUCGAACCCAAAGC----AAACCC-- -..........(((((.....)))))((((((((..((-----(((..........)))))...)))......((....))......)))))----......-- ( -17.30) >DroGri_CAF1 25975 94 + 1 CAAAUCCAAUUGGAGCUUAACGCUCCGCUUUUGUUACA-----CUUCCAUAGAAAAAAGUGCAUGCAACAAGAGAAGCGUCGAACCAAA-CUAAAUAAA--A-- .........((((...(..(((((...((((((((.((-----(((..........))))).....)))))))).)))))..).)))).-.........--.-- ( -18.20) >DroSec_CAF1 22658 85 + 1 -CACCCUAAUUGGAGCUCAACGCUCCGCUUUUGUUUCA-----CUUCCAUAGAAAA--GUGCAUGCAACAAGAGACUCGU-GAACCGAA-C-----CGA--A-- -(((.......(((((.....))))).((((((((.((-----(((........))--))).....))))))))....))-).......-.-----...--.-- ( -19.20) >DroSim_CAF1 17025 90 + 1 -CACCCUAAUUGGAGCUCAACGCUCCGCUUUUGUUUCACUUCACUUCCAUAGAAAA--GUGCAUGCAACAAGAGACUCGU-GAACAGAA-C-----CGA--A-- -(((.......(((((.....))))).((((((((.((...(((((........))--)))..)).))))))))....))-).......-.-----...--.-- ( -21.90) >DroAna_CAF1 19051 93 + 1 -CACCCUAAUUGGAGCUCAACGCUCCGCUUUUGUUUCACUUCGAUUCCAUAGAAAAA-UUGCAUGCAACAAGAGACUCGU-GAACCGAA-C-----AGA--ACG -(((.......(((((.....))))).((((((((.((...(((((.........))-)))..)).))))))))....))-).......-.-----...--... ( -18.50) >consensus _CACCCUAAUUGGAGCUCAACGCUCCGCUUUUGUUUCA_____CUUCCAUAGAAAA__GUGCAUGCAACAAGAGACUCGU_GAACCGAA_C_____AGA__A__ ...........(((((.....))))).((((((((.((......(((....))).........)).)))))))).............................. (-14.31 = -14.31 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:00 2006