| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,100,263 – 21,100,374 |
| Length | 111 |
| Max. P | 0.868005 |
| Location | 21,100,263 – 21,100,374 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.55 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -16.95 |
| Energy contribution | -18.51 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21100263 111 - 22407834 U-AAAGGUCGAACGU-UAUUCAAAUAGAACUAUACUAUAU--UUUUGAAAAUAACCAAUUGGGAAUAUAUACUAAAUAUUAUACGCAUAUGCC-UUAUGUACAUUUUGGCCAGCAG .-...(((((((...-(((((..((((.......))))..--............((....))))))).................(((((....-.)))))....)))))))..... ( -16.00) >DroPse_CAF1 30477 113 - 1 UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG-UGAAUAUAA--UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...(((((((..........((....))(((....))-)))))))).--)))))...)))))..))))..)))))))..... ( -27.70) >DroPer_CAF1 30385 113 - 1 UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG-UGAAUAUAA--UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...(((((((..........((....))(((....))-)))))))).--)))))...)))))..))))..)))))))..... ( -27.70) >consensus UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG_UGAAUAUAA__UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...((((((((.........((....))..........))))))))...)))))...)))))..))))..)))))))..... (-16.95 = -18.51 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:05 2006