| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,084,671 – 21,084,770 |
| Length | 99 |
| Max. P | 0.966236 |
| Location | 21,084,671 – 21,084,770 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -25.58 |
| Energy contribution | -25.38 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21084671 99 + 22407834 AAAGGAAAAACAUUUCGGGCGGUGCAGUGUGCAUUGCAAAGGCAUUGCAGAACUCUAAGAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ....((((....))))..((((.(.((((((((.(((....))).)))((....))......))).)).).)))).((((.(((((....))))))))) ( -32.70) >DroSec_CAF1 7406 99 + 1 AAAGGAACAACAUCUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCAACACCCGCAUCCGGAAACGGAUUGGG ..((((....((((......))))..(((((((((((....)))))))((....))....))))...)))).....((((.(((((....))))))))) ( -32.00) >DroSim_CAF1 7496 99 + 1 AAAGGAACAACAUCUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ..................((((.(.((((((((((((....))))))(((....)))....)))).)).).)))).((((.(((((....))))))))) ( -34.80) >DroEre_CAF1 7514 97 + 1 -AAUAAACAACAUUUCGAACGGUGCAGUGUGCA-GGCAAAAGCAUUGUAGAGUUCCAAAAGCACUUCUCCUUCGCACCCGCAUCCGGAAACGGAUUGGG -...........(((.((((..((((((((...-.......))))))))..)))).))).((...........)).((((.(((((....))))))))) ( -28.20) >DroYak_CAF1 7437 98 + 1 -AAUAAACAACAUUUCGAACGGUGCAGUGUGCAAGGCAAAGACAUUGUAGAACUCCACAGACACUUCUCCUCCGCACCCGUAUCCGGAAACGGAUUGGG -..................((((((.....)))(((..(((...((((.(....).))))...)))..))))))..((((.(((((....))))))))) ( -24.30) >consensus AAAGGAACAACAUUUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ..............((..(((((((..(((.....)))...))))))).)).........................((((.(((((....))))))))) (-25.58 = -25.38 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:59 2006