| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,020,372 – 21,020,465 |
| Length | 93 |
| Max. P | 0.787442 |
| Location | 21,020,372 – 21,020,465 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.15 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -19.42 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21020372 93 + 22407834 CAAUGUAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUAGCGCUGUCAUUAUGAAAGCGAAAUGCAGGACAACGACAAAAAGGAAUAAACAC-CAC ........((((((((((.........(((((((((..(.(((.((((.((....)).))))))))..))))))))))))))..))))).-... ( -19.40) >DroSec_CAF1 65677 94 + 1 CAAUGUAUUGUUUUCCUUGUUAUUAUUUUUCUUGUUGGCGCUGUCAUUAUGAAAGCGAAAUGCAGGACAACGACAAAAAGGAAUAAACACCCAC ........((((((((((...........((((((...((((.((.....)).))))....))))))..........)))))..)))))..... ( -20.00) >DroEre_CAF1 71534 94 + 1 CAAGGGAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUGGCGCUGUCAUUAUGAAAGCGAAAUGCAGGACAACGGCAAAAAGGAAUAAACACCCAC (((((((.....)))))))(((((.((((((((((((.(.(((.((((.((....)).)))))))).))))))))))))..)))))........ ( -27.80) >DroYak_CAF1 76489 93 + 1 CAACGUAUUGUUUUCCUUA-UAUUAUUUUUGUUGUUGACGCUGUCAUUAUGAAAGCGAAAUGCAGGACAACGGCAAAAAGGAAUAAACACCCUC ........((((((((((.-.......((((((((((.(.(((.((((.((....)).)))))))).)))))))))))))))..)))))..... ( -21.00) >consensus CAAUGUAUUGUUUUCCUUGUUAUUAUUUUUGUUGUUGGCGCUGUCAUUAUGAAAGCGAAAUGCAGGACAACGACAAAAAGGAAUAAACACCCAC ........((((((((((.........((((((((((.(.(((.((((.((....)).)))))))).)))))))))))))))..)))))..... (-19.42 = -19.68 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:48 2006