Locus 7594

Sequence ID 2L_DroMel_CAF1
Location 21,003,680 – 21,003,798
Length 118
Max. P 0.539100
window12209

overview

Window 9

Location 21,003,680 – 21,003,798
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 87.63
Mean single sequence MFE -31.24
Consensus MFE -22.18
Energy contribution -23.90
Covariance contribution 1.72
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.539100
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21003680 118 + 22407834
AUCGCCUUUCGCUUUGCUAUACACUCGACCAAUGGGUCUUAUUGACUGUGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCUUAUCUAAUCUAUGUAAGGACAG
...(((((.(((((((.((((((.((((((....)))).....)).))))))....)))))((((((((.((((...(((.....)))...)))).))))).)))..)).)))).).. ( -25.60)
>DroSec_CAF1 52392 118 + 1
AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCCGGGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCCUAUCUGAUCUUUGAAAGAACAG
.....(((((...........((((((.((((((.....)))))).)))))).....(((((.((((((.((((...(((.....)))...)))).)))))).))))))))))..... ( -32.20)
>DroSim_CAF1 54276 118 + 1
AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCUGGGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCCUAUCUGAUCUGUAAAAGAACAG
...(((....((((((((............)))))))).....)))((((....)))).((((...((((((((((....)))).))))))..))))..(((.(((.....))).))) ( -29.30)
>DroEre_CAF1 58030 118 + 1
AUCGCCUUUCGCUUUAUUAUACACUCGGCCAUUGGGGCUUGUUGGCUGAGUGAACCUGAAGGAUAGAUGCGAAGUUUCGAGGGCCUCAUAUGUUCUUAUCUUAUCUAUGAAAGAAAAG
...((((((((((((((....((((((((((...........))))))))))..((....))))))).))))).......))))........(((((.((........)))))))... ( -32.31)
>DroYak_CAF1 63260 117 + 1
AUCGCCUUUCGCUUUAUUAUACACUCGGCCAAUGGGGCUUAUUGGCUGAGUGAACCUAAAGGAUAGAUUCGAAUAUUUGAGGGCCUCAUAU-UUCUUAUCUUAUCUAUAUAAGAAAGG
....((((((.(((((.....(((((((((((((.....)))))))))))))....)))))(((((((..(((....((((...))))...-)))..))).)))).......)))))) ( -36.80)
>consensus
AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCUGAGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCUUAUCUGAUCUAUGAAAGAACAG
.....((((((..........((((((.((((((.....)))))).))))))........(((((((((.((((...(((.....)))...)))).))))).)))).))))))..... (-22.18 = -23.90 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:41 2006