Locus 759

Sequence ID 2L_DroMel_CAF1
Location 2,173,744 – 2,173,840
Length 96
Max. P 0.563223
window1247

overview

Window 7

Location 2,173,744 – 2,173,840
Length 96
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -26.98
Consensus MFE -12.41
Energy contribution -12.99
Covariance contribution 0.58
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.46
SVM decision value 0.06
SVM RNA-class probability 0.563223
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2173744 96 - 22407834
-----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------
-----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80)
>DroSim_CAF1 14205 96 - 1
-----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------
-----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80)
>DroEre_CAF1 17543 96 - 1
-----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------
-----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80)
>DroYak_CAF1 18282 96 - 1
-----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------
-----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80)
>DroMoj_CAF1 19146 104 - 1
-----CGAAUUGUUGUAACCUGUUGUGUGAAUUUAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGACUUAUGCCGCCG------ACACAGCAAAUGCAACA
-----.....(((((((...(((((((((((..((((((-((....)))))))).)))........(((((((......)))))...))....------))))))))..))))))) ( -31.40)
>DroAna_CAF1 15315 83 - 1
CGGCUUUGUCUC-AGUAACCUGUUGU-UGAAA-UAUGUUAACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAG------------------CUCG------------
.(((((......-.....(((((..(-(((((-(((((((.(....))))))))))))))...)))))(((.....))))))------------------))..------------ ( -23.30)
>consensus
_____CUGUCUG_AGUAACCUGUUGUGUGAAU_UAUGUU_ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG____________
..................(((((....(((...((((((.((....))))))))..)))....)))))(((.....)))(((((..............)))))............. (-12.41 = -12.99 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:56 2006