Locus 7589

Sequence ID 2L_DroMel_CAF1
Location 20,993,869 – 20,993,964
Length 95
Max. P 0.938115
window12201

overview

Window 1

Location 20,993,869 – 20,993,964
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 89.12
Mean single sequence MFE -30.97
Consensus MFE -25.67
Energy contribution -26.00
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.05
Structure conservation index 0.83
SVM decision value 1.29
SVM RNA-class probability 0.938115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20993869 95 + 22407834
CGAAGCCUAAGCUGAAGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGUCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG
....((((..(((.......)))..(((((....)))))..))))..(((((((((.....(....)((((.......)))).)))))).))).. ( -31.00)
>DroEre_CAF1 48431 90 + 1
-----CUAAAGCUAAGGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAUGCCGAAAGGCAGGAAGCAACUGAAACACUUGACCAG
-----.....(((.......)))..(((((....)))))...((.(((((((((.((.((((....)))).))....)))....)))))).)).. ( -29.70)
>DroYak_CAF1 52980 95 + 1
UGAAGUUGAAGCUUAAGGAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGGCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG
..........((((.....))))..(((((....)))))...((.((((((....((..(((....)))..)).((....))..)))))).)).. ( -32.20)
>consensus
_GAAGCUAAAGCUAAAGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGGCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG
..........(((.......)))..(((((....)))))...((.(((((((((.((..(((....)))..))....)))....)))))).)).. (-25.67 = -26.00 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:34 2006