Locus 7588

Sequence ID 2L_DroMel_CAF1
Location 20,989,939 – 20,990,033
Length 94
Max. P 0.530588
window12200

overview

Window 0

Location 20,989,939 – 20,990,033
Length 94
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.83
Mean single sequence MFE -24.45
Consensus MFE -20.73
Energy contribution -21.23
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.85
SVM decision value -0.01
SVM RNA-class probability 0.530588
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20989939 94 - 22407834
GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------CGAUCCCAUCUCGUU
.........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50)
>DroSec_CAF1 38845 94 - 1
GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUGUUA-----------CGAUCCCAUCUCGUU
.........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50)
>DroSim_CAF1 39236 94 - 1
GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUGUUA-----------CGAUCCCAUCUCGUU
.........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50)
>DroEre_CAF1 44538 83 - 1
GUUAUAAAAAGUCAUGUUCCGCUGCACUUAAUUAGCGGCCGACCUCAGCGGCAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------U-----------GUU
..(((((..((.(((((((.(((((.........))))).)).....(.((((((.....)))))))))))).)).)))-----------)-----------).. ( -21.90)
>DroYak_CAF1 48951 83 - 1
GUUAUAAAAAGUCAUGUUUGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------U-----------GUU
..(((((..((.(((((..((((((.........))))))(((((((......)))).)))......))))).)).)))-----------)-----------).. ( -23.20)
>DroAna_CAF1 70414 102 - 1
GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCUACUGAAUGAGUGUCAUGCCCAUAUGUCCUCUUCUAUUUAGGAGAGAUGCCAUC---UU
..........(.(((((..((((((.........))))))((((((........))).)))......))))).)(((((((....)))))))........---.. ( -28.10)
>consensus
GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA___________CGAUCCCAUC__GUU
.........((.(((((..((((((.........))))))(((((((......)))).)))......))))).)).............................. (-20.73 = -21.23 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:33 2006