Locus 758

Sequence ID 2L_DroMel_CAF1
Location 2,172,359 – 2,172,456
Length 97
Max. P 0.617367
window1246

overview

Window 6

Location 2,172,359 – 2,172,456
Length 97
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 85.78
Mean single sequence MFE -37.76
Consensus MFE -28.65
Energy contribution -29.09
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.76
SVM decision value 0.17
SVM RNA-class probability 0.617367
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2172359 97 + 22407834
UGAGUUUUCAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAA------------------UGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C
...((((...(((((((..(((.((((((((.(....(((...------------------((((....)))))))....).))))))))...)))..))))))).....))))--. ( -36.40)
>DroSec_CAF1 18411 115 + 1
UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAAUGGGAGUGGGAAUGAGAAUGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGCUCCGAAC--C
...((((.(((((((((..(((.((((((((.(....(((....((((((....((....))...))))))..)))....).))))))))...)))..)))))))..)).))))--. ( -41.00)
>DroSim_CAF1 12792 115 + 1
UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAAUGGGAGUGGGAAUGAGGAUGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C
.....((((((((((((..((((..(.....)(((((..(.....(.(((.((..((((((......)))))))).))).).)..)))))..))))..)))))))...))))).--. ( -39.80)
>DroEre_CAF1 16190 97 + 1
UGAGUCUUGAAGUAGGCAAUCCGGAGGACGACGGGAUUGGGAA------------------UGCGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C
......(((((((((((..(((.((((((..((....))..((------------------(((((((.......)))))))))))))))...)))..)))))))...))))..--. ( -35.50)
>DroYak_CAF1 16871 99 + 1
UGAGUCUUGAAGUAGGCAAUCCGGAGGAUGACGAGAAUGAGAA------------------UGCGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAACACC
...((.(((((((((((..((((..(.....)((((((...((------------------(((((((.......)))))))))))))))..))))..)))))))...))))))... ( -36.10)
>consensus
UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAA__________________UGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC__C
..........(((((((..(((.((((((((.(....(((.....................((((....)))))))....).))))))))...)))..)))))))............ (-28.65 = -29.09 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:55 2006