Locus 7574

Sequence ID 2L_DroMel_CAF1
Location 20,948,930 – 20,949,021
Length 91
Max. P 0.546777
window12181

overview

Window 1

Location 20,948,930 – 20,949,021
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 86.03
Mean single sequence MFE -21.58
Consensus MFE -14.33
Energy contribution -14.21
Covariance contribution -0.12
Combinations/Pair 1.16
Mean z-score -1.85
Structure conservation index 0.66
SVM decision value 0.03
SVM RNA-class probability 0.546777
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20948930 91 - 22407834
UGCUGUCGUAAAUCCCUGAAAGAAAAAAGGCAAA-GGGAGACAAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU
.(((...((...(((((................)-)))).))........((((((((..((((.(.....).)))).)))))))).))).. ( -23.59)
>DroSec_CAF1 2870 91 - 1
UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA-GGGAGAAAAAAUGGAAUUCUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU
.((((((((...(((((....(......)....)-))))................(((..((((.(.....).)))).)))))))).))).. ( -21.10)
>DroSim_CAF1 2841 91 - 1
UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA-GGGAGACAAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU
.(((...((...(((((....(......)....)-)))).))........((((((((..((((.(.....).)))).)))))))).))).. ( -24.10)
>DroEre_CAF1 11368 81 - 1
UGCUGUCGUAAAUCCUUGAGGGA-AAAGCGGAGGAGG---------UGGAAUUG-AGGGACAGCAGUAGGACACUUGGCCAGCGAUAAGCGU
.((((((((...(((.....)))-.....((...(((---------((..((((-........))))....)))))..)).))))).))).. ( -19.10)
>DroYak_CAF1 13295 91 - 1
UGCUGUCGUAAAUCCUUGAAAGAAAAAACGGAAGAGGGAGA-AAAAUGGACUUGUAGGGACAGGAAUAGGAUACUUGGCCCACGAUAAGCGA
.((((((((...(((((....(......)....)))))...-..............(((.((((.........)))).)))))))).))).. ( -20.00)
>consensus
UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA_GGGAGA_AAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU
.((((((((...((((...................))))..................((.((((.(.....).)))).)).))))).))).. (-14.33 = -14.21 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:16 2006